Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j17
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21540.1 68416.m02717 transducin family protein / WD-40 repea...    32   0.42 
At2g23030.1 68415.m02746 protein kinase, putative similar to pro...    30   1.7  
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea...    29   3.0  
At5g57110.2 68418.m07131 calcium-transporting ATPase 8, plasma m...    27   9.1  
At5g57110.1 68418.m07130 calcium-transporting ATPase 8, plasma m...    27   9.1  
At5g14210.1 68418.m01660 leucine-rich repeat transmembrane prote...    27   9.1  
At5g02110.1 68418.m00132 cyclin family protein low similarity to...    27   9.1  
At3g52690.1 68416.m05804 hypothetical protein predicted proteins...    27   9.1  
At3g27680.1 68416.m03456 self-incompatibility protein-related co...    27   9.1  
At3g24700.1 68416.m03101 F-box family protein contains F-box dom...    27   9.1  

>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
           family protein contains Pfam profile: PF00400 WD domain,
           G-beta repeat (10 copies); similar to WD-repeat protein
           3 (SP:Q9UNX4) [Homo sapiens]
          Length = 955

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 524 PALESFNMQFYGSPGISSYSTPFITQRSPALSLGLTADQTK--MAVGYGDSSIKVYDME 694
           PALE   +        S   TP  ++  P+L++   A      +AVGY D SI+++D E
Sbjct: 36  PALEKVGIWHVRQGVCSKTLTPSSSRGGPSLAVTSIASSASSLVAVGYADGSIRIWDTE 94


>At2g23030.1 68415.m02746 protein kinase, putative similar to
           protein kinase 3 [Glycine max] GP|310582|gb|AAB68961
          Length = 339

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 128 HKTRLKEKKVYAWIQDNFAKFLKGTANNITYNR 226
           H++ LKE K +AW   N  + LK  A  I Y R
Sbjct: 247 HRSTLKEIKSHAWFLKNLPRELKEPAQAIYYQR 279


>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
           family protein similar to TBP-associated factor
           (GI:1732075) [Homo sapiens] and to 100 kDa subunit of
           Pol II transcription factor (GI:1491718) {Homo sapiens];
           contains Pfam PF00400: WD domain, G-beta repeat (6
           copies)|8689032|gb|AV528749.1|AV528749
          Length = 666

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 563 PGISSYSTPFITQRSPALSLGLTADQTKMAVGYGDSSIKVYDM 691
           P +S Y+  F+   +      ++ D + +A G+ DSSIKV+DM
Sbjct: 341 PSVSFYT--FVNTHNGLNCSSISHDGSLVAGGFSDSSIKVWDM 381


>At5g57110.2 68418.m07131 calcium-transporting ATPase 8, plasma
            membrane-type / Ca(2+)-ATPase isoform 8 (ACA8) identical
            to calcium-transporting ATPase 8, plasma membrane-type
            SP:Q9LF79 from [Arabidopsis thaliana]
          Length = 1074

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 401  IQWRTLAWAETAHFSMYIALYLYYRGASELSLMNVLQ*HEIRLENTV 261
            I WR L     A + + + L L +RG S L L + +  H  R++NT+
Sbjct: 915  IMWRNLLIQ--AIYQVSVLLTLNFRGISILGLEHEVHEHATRVKNTI 959


>At5g57110.1 68418.m07130 calcium-transporting ATPase 8, plasma
            membrane-type / Ca(2+)-ATPase isoform 8 (ACA8) identical
            to calcium-transporting ATPase 8, plasma membrane-type
            SP:Q9LF79 from [Arabidopsis thaliana]
          Length = 1074

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 401  IQWRTLAWAETAHFSMYIALYLYYRGASELSLMNVLQ*HEIRLENTV 261
            I WR L     A + + + L L +RG S L L + +  H  R++NT+
Sbjct: 915  IMWRNLLIQ--AIYQVSVLLTLNFRGISILGLEHEVHEHATRVKNTI 959


>At5g14210.1 68418.m01660 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 812

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +3

Query: 54  FRNTLKTLNIII---KMKKIP*FGIHFFIKRD*KKRKSTLGFKIILLNF 191
           F N LKT NI++   K+ K+  +G+   I+ + K   STL   ++LL+F
Sbjct: 620 FNNQLKTNNILLDEHKIAKLSDYGVSAIIEENEKLEDSTL---LLLLHF 665


>At5g02110.1 68418.m00132 cyclin family protein low similarity to
           cyclin D3.1 from [Lycopersicon esculentum] GI:5679622,
           [Nicotiana tabacum] GI:4160300; contains Pfam profiles
           PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
           C-terminal domain
          Length = 341

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 344 VLCTLRNVQFPPKPV-YAIEYSMVEERVCYAACMD 445
           V+C L+ +Q+PP  V  A  + ++E++VC  + M+
Sbjct: 212 VICDLKMLQYPPSVVATAAIWILMEDKVCRESIMN 246


>At3g52690.1 68416.m05804 hypothetical protein predicted proteins,
           Arabidopsis thaliana
          Length = 299

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 356 LRNVQFPPKPVYAIEYSMVEERVCYAACMDGAI 454
           L+NV F  +P+++ E++ +EE+      +DG +
Sbjct: 255 LKNVSFSTRPIHSKEHNKLEEKCKMLKELDGVV 287


>At3g27680.1 68416.m03456 self-incompatibility protein-related
           contains similarity to S3 self-incompatibility protein
           [Papaver rhoeas] GI:1107841
          Length = 134

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +2

Query: 41  KNEVLSEYIKNIKYHYKNEENPVIWYPLFHKTRLKEKKVYAWIQDNFAKFLKGTA-NNIT 217
           KN+V+   I  + Y Y N     IW        LK++  Y   Q NF  F + TA +N  
Sbjct: 43  KNDVIGPKIIPVGYDYVNSFRANIWGTTRFMCTLKQRPNYRHYQ-NFTAFKQYTAYDNGA 101

Query: 218 YNRWYFTENG 247
              W   E+G
Sbjct: 102 DWDWRAREDG 111


>At3g24700.1 68416.m03101 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 249

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 417 KEFATLLVWTVQFTGSKYPTLWRQ*RNLHYSVLEPILL*NRSTCNSMEVLGYHLIPHHSS 596
           +++  L+VW    TG      W Q  N+   V     + N  +CNS ++L + ++P +SS
Sbjct: 119 EDYGRLVVWN-PCTGQ---IKWIQANNMLMDVYVLGYVNNNKSCNSYKILNFGILPLNSS 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,081,355
Number of Sequences: 28952
Number of extensions: 315186
Number of successful extensions: 746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)