Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j08
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    29   0.62 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   1.9  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   1.9  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    27   1.9  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   2.5  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.8  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   5.8  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   5.8  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   7.6  

>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 349 PNTPKKNAKSRGKIVAEFVKSKNEAASYVQEMKSYFEECNNFIFVAMDFGNT 504
           P+ P +N KS              A S   E   + ++C + +FV++DFG+T
Sbjct: 793 PSPPNQNGKSLFSFHPSRPAWLLYAGSENCEKNPFADDCRDVVFVSLDFGDT 844


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 355  TPKKNAKSRGKIVAEFVKSKNEAASYVQEMKSYFEECNNFI 477
            T ++N     K+ AE  K KNE+ + +++MK+Y     N I
Sbjct: 1109 TQERNRTISSKL-AEMEKQKNESKAALEQMKNYVTNIENNI 1148


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = +1

Query: 439 EMKSYFEECNNFIFVAMDFGNTTPVINSFTNVTNSITTH---TDPC----LGFGNSLPDM 597
           E KSY    NN +F       TTPV  SF   T +I T+    + C     GF  +L  M
Sbjct: 574 EFKSYVLFKNNLVFSETKHFGTTPV--SFRRFTMNIGTYIICNNDCPHMVYGFNGALCYM 631

Query: 598 PLKKVEAGLTKMHDICK 648
           PL      + + +D+C+
Sbjct: 632 PL-----SMPQSYDVCQ 643


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 241 LSKAQVLQKVDHKIHLYLLPLSDCSHCLHHSFHCIRII 128
           +S  +V++ V+H +  Y+  L   S+ +H + HC+ II
Sbjct: 229 MSDEEVIEFVNHYMPQYVFYLGTLSNKVHLNPHCLEII 266


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 436 QEMKSYFEECNNFIFVAMDFGNTTPVINSFTNVTNSIT 549
           Q +  YFE+ N FI  A+   N   +++ F  ++ S+T
Sbjct: 104 QNILQYFEKSNKFIAFALS-KNAKVLVHCFAGISRSVT 140


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 390 NFTSAFCIFLWCIW*IQKYSHFLSEGRHSK 301
           NF+ A    +WC++ +   SH++ E  + K
Sbjct: 671 NFSFAIAFKIWCMFALDPKSHYMIEDPYMK 700


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -1

Query: 659 LLSPLQISCILVRPASTFFNGISGKLFPKPKQGSVCVVIEFVTFVKLFMTGVVFPKSI 486
           LL PL I  +L   ++    G+S +L   P   +V  +  F   + + +   +FP S+
Sbjct: 330 LLFPLCILLVLYLVSNFLSVGVSRRLANTPYVANVAFINMFFLTIYILIDAYLFPSSV 387


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 313 PLRKKMGVLLNLPNTPKKNAKSRGKIVAEFVKSKNEA 423
           P +K+M    +L +T KK  KSR  I  + + SK EA
Sbjct: 2   PPKKRMKNGSSLKSTSKKGEKSRNIITIQDLFSKREA 38


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = -1

Query: 650 PLQISCILVRPASTFFNGISGKLFPKPKQGSVCVVIEFVTFVKLFMTGVVFPKS 489
           P  I+ I   P      GIS K +     G+V   ++    +K++     FP +
Sbjct: 387 PRSINAIQQLPCFLIDTGISAKEYDFSYDGTVFATVDKDALIKIYTVPTTFPST 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,909
Number of Sequences: 5004
Number of extensions: 55224
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)