Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j08
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0440 - 9423874-9423999,9424199-9424393,9424885-9425091,942...    38   0.006
06_01_0186 + 1454533-1454710,1455299-1455420,1455508-1455806,145...    29   3.4  
02_02_0509 - 11064209-11064470,11065945-11066132,11066249-110664...    29   3.4  
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430...    29   4.5  
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    29   4.5  
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252...    28   7.9  

>09_02_0440 -
           9423874-9423999,9424199-9424393,9424885-9425091,
           9425518-9425707,9425849-9425931
          Length = 266

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 1/128 (0%)
 Frame = +1

Query: 151 YDADSDYSLIVATNRDEFYDRPSAELAPWKDNPNIIXXXXXXXXXXXXTWLAVSPLRKKM 330
           + A   + L++  NRDEF+ RP+  +  W +    I            TW+  +    ++
Sbjct: 8   WQAHPQHQLLLLLNRDEFHSRPTKAVGWWGEGSKKI--LGGRDVLGGGTWMGCTK-DGRL 64

Query: 331 GVLLN-LPNTPKKNAKSRGKIVAEFVKSKNEAASYVQEMKSYFEECNNFIFVAMDFGNTT 507
             L N L       A++RG +   F++S         E+    +E N F  V  D   TT
Sbjct: 65  AFLTNVLEPDAMPGARTRGDLPLRFLQSNKSPLEVATEVAKEADEYNGFNLVLADL--TT 122

Query: 508 PVINSFTN 531
            V+   +N
Sbjct: 123 NVMVYVSN 130


>06_01_0186 +
           1454533-1454710,1455299-1455420,1455508-1455806,
           1455846-1455933,1456015-1456096,1457130-1457242
          Length = 293

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 486 CYKNEIITFFKIRFHFLNI*CSLIFTFHKFCYNFTSAFCIF 364
           C + E+    K    F     SLIF  HKFC++FT    IF
Sbjct: 174 CARREVSRILKSHAFFC---LSLIFHLHKFCWSFTFPQDIF 211


>02_02_0509 -
           11064209-11064470,11065945-11066132,11066249-11066493,
           11066816-11066987,11067090-11067496,11068443-11068587
          Length = 472

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = +1

Query: 364 KNAKSRGKIVAEFVKSKNEA-ASYVQEMKSYFEECNNFIFVAMDFGNTTPVINSFTNVTN 540
           +  +S G   A  V SK     S  Q   S  E   +   V  D+    P  +  TNV  
Sbjct: 32  RRLRSHGAAAAAPVASKGHLFLSQRQPRTSNLEAVGDVTAVPEDYTENMPSSSGSTNVAT 91

Query: 541 SITTHTDPCLG 573
           SI++H D   G
Sbjct: 92  SISSHEDNLAG 102


>03_05_0976 -
           29341981-29342229,29342388-29342621,29342771-29343046,
           29343181-29343457,29343549-29343847,29344021-29344152,
           29344451-29344660,29344812-29344875,29346114-29346260,
           29346477-29346760
          Length = 723

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 647 LQISCILVRPASTFFNGISGKLFPKPKQGSVCVVIEFVTFVKLFMTGVV 501
           L +S   V P   FF+ I G +    ++ S C  I F T   +F   V+
Sbjct: 395 LLLSLYTVPPLMMFFSSIEGSISRSGRKKSACCKILFFTIWNVFFVNVL 443


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -2

Query: 451 KISFLEHMMQPHFYFSQILLQFYLGFLHF----SLVYLVNSKVL 332
           ++  LE++  PHF   +IL + +  F+H+    +  YL+N   L
Sbjct: 492 EVFLLENLFHPHFLCLEILTELWCFFMHYAEAETSTYLINQLFL 535


>03_05_0650 -
           26423829-26424179,26424379-26424612,26424961-26425236,
           26425372-26425648,26425751-26425764,26425843-26425989,
           26426306-26426366,26426570-26426604,26426688-26426882,
           26428230-26428439,26428865-26428940,26429519-26429799
          Length = 718

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -1

Query: 647 LQISCILVRPASTFFNGISGKLFPKPKQGSVCVVIEFVTFVKLFMTGVVFPKSIATKMKL 468
           LQI    V P   FF+ + G +    ++ S C  + + T   +F   V+   +I +++  
Sbjct: 356 LQIFLYTVPPTMMFFSTLEGPVSHSERKRSACCKVLYFTIWNVFFVNVLSGSAI-SQVNA 414

Query: 467 LHSSK 453
           L S K
Sbjct: 415 LSSPK 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,541,316
Number of Sequences: 37544
Number of extensions: 293122
Number of successful extensions: 659
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)