Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j08
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -3

Query: 387 FTSAFC---IFLWCIW*IQKYSHFLSEGRHSKPRPSFTAP 277
           F + FC   ++   +    + S   +  +HS  RPSF +P
Sbjct: 726 FAAGFCFTVVYAALLTKTNRISRIFNASKHSAKRPSFISP 765


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 391 VAEFVKSKNEAASYVQEMKSYFEECNNFIFVAM 489
           +A  V++     SY++  + +F  C  F+F AM
Sbjct: 277 LASKVENSLPKVSYIKASEIWFLGCTIFLFAAM 309


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 463 ILQNKISFLEHMMQPHFYFSQ 401
           IL  + S L HMM+  FY SQ
Sbjct: 441 ILYFRCSNLNHMMREEFYQSQ 461


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = -3

Query: 456 KIRFHFLNI*CSLIFTFHKFCYNFTSAFCIFLWCIW*IQKYSH 328
           K+ FH ++I    ++ +H     + S   + L C    + Y H
Sbjct: 99  KVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPH 141


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 403 VKSKNEAASYVQEMKSYFEECNNFIFVAM 489
           V+S     SYV+ +  Y   C  F+F A+
Sbjct: 291 VRSSLPRISYVKAIDIYLVMCFVFVFAAL 319


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 416 MRLHHMFKK*NLILKNVIISFL 481
           +R   +F   NLIL  V+ISFL
Sbjct: 229 IRRKTLFYTVNLILPTVLISFL 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,042
Number of Sequences: 438
Number of extensions: 3985
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)