Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j07
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0114 - 886404-887111                                             28   4.0  
12_01_0124 - 943773-944474                                             27   5.3  
10_08_0506 + 18390892-18391373,18392699-18392798,18393152-183934...    27   7.0  

>11_01_0114 - 886404-887111
          Length = 235

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 160 FIIHKDSEFTKWQREKLRSCLCWC 231
           F  HKD++    +R + R CLC C
Sbjct: 29  FRTHKDADLESRRRRRRRRCLCCC 52


>12_01_0124 - 943773-944474
          Length = 233

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 160 FIIHKDSEFTKWQREKLRSCLCWC 231
           F  HKD++     R + R CLC C
Sbjct: 27  FRAHKDADLESTTRRRRRRCLCCC 50


>10_08_0506 +
           18390892-18391373,18392699-18392798,18393152-18393485,
           18393756-18393868,18394437-18394565,18394746-18394839,
           18394942-18395025,18395265-18395896,18396662-18396951,
           18397098-18397242,18397876-18397973,18398075-18398156,
           18398607-18398612,18398845-18398928
          Length = 890

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 293 SENRKKHKFIIK*VRTSSSRFLWYI*GLLIPKVEK 397
           S+N K H+  IK +R     FL  I GLL+  VEK
Sbjct: 714 SQNSKAHQVKIKQLRDHELDFLVAILGLLVNLVEK 748


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,444,091
Number of Sequences: 37544
Number of extensions: 180306
Number of successful extensions: 332
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)