Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j07
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   6.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.2  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 199 REKLRSCLCWC 231
           R  + SC CWC
Sbjct: 5   RHVVMSCCCWC 15


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 8   KVENVGKWLCIV 43
           +VE+ GK+LCIV
Sbjct: 278 RVEDSGKYLCIV 289


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 156 RLNNYLIDKFTTHTIQINFT*SN*LLL 76
           ++ ++ +DK  T+  Q + T +N LLL
Sbjct: 450 KIESFTVDKLITYFEQFDTTINNGLLL 476


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 156 RLNNYLIDKFTTHTIQINFT*SN*LLL 76
           ++ ++ +DK  T+  Q + T +N LLL
Sbjct: 450 KIESFTVDKLITYFEQFDTTINNGLLL 476


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 328 ISADIVVEIPLVHIGVV 378
           +SAD+ V  PL+ +G +
Sbjct: 118 LSADVAVATPLISMGAL 134


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 236 HPHQHKQ 216
           HPHQH+Q
Sbjct: 20  HPHQHQQ 26


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 254 HLIVSRHPHQH 222
           H I+S+HP QH
Sbjct: 192 HGILSQHPQQH 202


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +3

Query: 291  SQKTEKSTSLSLNKCGHRRRDSFGTYRG 374
            S +TE S  L   K  H R  S   Y G
Sbjct: 1794 SSRTESSNQLDAGKLKHIRAVSDFIYHG 1821


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +3

Query: 291  SQKTEKSTSLSLNKCGHRRRDSFGTYRG 374
            S +TE S  L   K  H R  S   Y G
Sbjct: 1790 SSRTESSNQLDAGKLKHIRAVSDFIYHG 1817


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,997
Number of Sequences: 438
Number of extensions: 2442
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)