Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j06
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    36   0.004
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    29   0.68 
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   3.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   8.4  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +1

Query: 139 WVREFAIRSSALAQQSTYSKRLKD*STVLNQRKTNKIR*SVVVEQSEIER*SFKKKYHRK 318
           ++R F  RSS  ++ S   K ++D      +R+T +   + V+EQ ++     K+  H  
Sbjct: 605 FIRSFTFRSSNNSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKLIEIKNKRPAHIN 664

Query: 319 DVIVRP 336
           DV VRP
Sbjct: 665 DVYVRP 670


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 398 YFCCIFVLAAKQYPCFSISLFGLTITSFL*YFF 300
           Y CC  +  + QY  F ISLF L +   L + F
Sbjct: 72  YLCCGRLQMSSQYKAFLISLFALILPGVLFFIF 104


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 107 GSTAHNH-YANDGDKYYFCKIHF 42
           G ++H + + ND  ++Y+CK HF
Sbjct: 200 GFSSHTYKFVNDKGEFYYCKWHF 222


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +3

Query: 369 SRQDKNTAEISTIVSQTYKHEYLQKLIEQWK 461
           + +D    E+  I+ Q +  EY+ +++  WK
Sbjct: 30  TERDLKLPELGDIIGQVHAPEYISQVLSGWK 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,212
Number of Sequences: 5004
Number of extensions: 51270
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)