Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j05
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    29   0.49 
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.1  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    28   1.5  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    28   1.5  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   2.0  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.1  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    25   8.0  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   8.0  

>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 81  ESIKKGRSVKVPITSTLISDNDRTRIYKVVRFINRKPQKGSIQIDLTSRAKKTSKYTETE 260
           E + K         STL  DNDR +    V    ++ +KG + I    R K +  +++ +
Sbjct: 297 EGVPKDSKATTFAASTLHVDNDRWKGVPFVFVSGKRMKKGEVYIKYYFRLKDSGIFSDVK 356

Query: 261 RR 266
           RR
Sbjct: 357 RR 358


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 386 GELLTAHGGGEMGAYLPQSRNKTVLRSLGEHETGGRVERLRF 511
           G+++ A G G+ G Y+P   +K  L +L ++  GG  + L F
Sbjct: 742 GDVIHALGSGKEGTYIPYRNSK--LTNLLQYSLGGNSKTLMF 781


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 24  TPSKIDTESISAKGLCENDES-IKKGRSVKVPITSTLISDN 143
           +PSK+ +E+      CEN E   ++G++   P++ ++ S+N
Sbjct: 369 SPSKLSSETTKVHRGCENTEKPSEEGKNFTTPLSDSVESEN 409


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/73 (23%), Positives = 33/73 (45%)
 Frame = +3

Query: 192 QKGSIQIDLTSRAKKTSKYTETERREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASP 371
           QK + + +  ++AK   + +  +  E+   PE++  +D    I +     R       + 
Sbjct: 182 QKETARDEKITKAKIALQASRAKSTESTSSPELSHSLDSSKSIASDMPIHRASHTTGYAA 241

Query: 372 ASLRKASFSPPTE 410
           ASL   SF+P T+
Sbjct: 242 ASLTSTSFTPVTK 254


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 249 TETERREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRK--ASFSPPTEVAKW 422
           TE +R+EA    EI+   D+K  +K    R + ++K + S   + K   S++ P  +A  
Sbjct: 163 TEKQRKEAIARGEISDSEDEKHTVKQKPLREK-KKKPLKSSEEISKDMGSYNLPRFLASL 221

Query: 423 APTCLNRETK 452
               LN +TK
Sbjct: 222 IDASLN-DTK 230


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -3

Query: 420 ISPPPWAVRSSPSSKTPATRPASA*TVSGCHCSLYPAFYRRLTQSRAVVSLPAAR 256
           + PP W    +    +P +  AS    S    S  PA  RRL+ S +  S P  R
Sbjct: 47  LRPPGWQPPVNTGPTSPVSINASNAAPSNLKASYIPANPRRLSSSTSSASSPPLR 101


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 177 INRKPQKGSIQIDLTSR--AKKTSKYTETERREAKRPPEIASGVDKKPDIKNSGSRRRFR 350
           +N+K +K  +++    R  A++  +  E   +E  + PE+ S  D   DIK   SR+   
Sbjct: 9   LNKKMEKIEVEMAEFERLGAEREKEAVERIVQEENQNPEVPSNDDASTDIK---SRKEGN 65

Query: 351 RKQVASPASLRKASF 395
            K  A    L   +F
Sbjct: 66  MKVTAEEIGLETENF 80


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
 Frame = +3

Query: 69  CENDE-SIKKGRSVKVPITSTLISDNDRTRIYKVVRFINRKPQKGSIQIDLTSRAKKTSK 245
           C ND   I+   S ++P++  + S N +  + ++   +    Q+  I+IDLT   +    
Sbjct: 195 CPNDAFDIRISISDELPVS--MPSGNQQPSLTRLKDRVGYVHQE--IKIDLTKTTQNDPV 250

Query: 246 YTETERREAK-RPPEIASGVDKKPDIKNSGSRRRFRRKQV 362
           Y  TER E +     IA   D+    K+      FRR Q+
Sbjct: 251 YDTTERHELEVEFGNIADLRDRAQKAKDGMEAPLFRRVQL 290


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 235 FFARDVKSIWILPFCGFRLMNL 170
           + +RD + +WILPF  + L  L
Sbjct: 520 YLSRDNRELWILPFAYYELAAL 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,773
Number of Sequences: 5004
Number of extensions: 54204
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)