Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11j05
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0108 + 14657020-14657193,14659040-14659355,14659728-146598... 33 0.29
05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747 31 1.2
11_06_0125 - 20356683-20357071,20359531-20362285 30 1.6
07_01_0101 - 752935-753223,753311-753408,753674-753764,753844-75... 30 1.6
02_01_0526 - 3830705-3830932,3831684-3831748,3831958-3832104,383... 30 1.6
01_06_1009 + 33796450-33796824,33796926-33796970,33797069-337971... 30 1.6
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 29 2.7
12_02_0879 + 23960084-23961551,23961796-23962184 29 3.6
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 29 4.8
03_05_0647 + 26390924-26391259 28 6.3
12_02_0046 + 12830974-12832386 28 8.4
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 28 8.4
>09_04_0108 +
14657020-14657193,14659040-14659355,14659728-14659887,
14661265-14661725,14663778-14663856,14664732-14664882,
14665414-14665467,14665724-14665888
Length = 519
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 339 RRFRRKQVASPASLRKASFSPPTEVAKWAPTCLNRETKPYYE 464
RRF + VASP ++ K + +PP++ KW T ++ YYE
Sbjct: 36 RRFAVRSVASPPTVPKPA-APPSKTGKWQWTFEDKPINIYYE 76
>05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747
Length = 368
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +3
Query: 198 GSIQID-LTSRAKKTSKYTETERREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASPA 374
G++ +D L + KT K+ E A PP A+ P G +++ + + +PA
Sbjct: 57 GNVSVDTLVKKLVKTGKHAEPWPEPAP-PPPAAAAAANSPGGGGGGKKKKKNKNKNKNPA 115
Query: 375 SLRKASFSPPTEVAKWA 425
+ + +PP A+ A
Sbjct: 116 NGQPGEPAPPAATAEVA 132
>11_06_0125 - 20356683-20357071,20359531-20362285
Length = 1047
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = -2
Query: 205 ILPFCGFRLMNLTTLYILVRSLSDISVLVIGTLTDLPFF 89
ILP RL NL LYI +S L IG LT+L +F
Sbjct: 436 ILPSSLGRLKNLQVLYIDNNKISGSIPLAIGNLTELNYF 474
>07_01_0101 -
752935-753223,753311-753408,753674-753764,753844-753882,
754019-754110,754535-754634,754742-754828,754949-755250,
756036-756242,756319-756405,756978-757058,757257-757365,
758037-758093,758188-758258,758414-758521,758874-758974,
759111-759177,759434-759535,759618-759662,759916-760511,
761956-762065,762165-762280
Length = 984
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 441 RETKPYYEAWVNTKLA-AVSRGCDLNDRERTRLMETFRKALECRIDSPELVYE 596
RET Y EA + A A R D + T+ +E KALE +SP++++E
Sbjct: 292 RETPTYPEALIGRGTAYAFQRELDSAISDFTKAVEDLTKALEFEPNSPDILHE 344
>02_01_0526 -
3830705-3830932,3831684-3831748,3831958-3832104,
3832208-3832256
Length = 162
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = +3
Query: 183 RKPQKGSIQIDLTSRAKKTSKYTETERREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQV 362
RK ++ + +SR ++ + E ERR K+ G DK+ D K S+ + + K+
Sbjct: 24 RKKRRDKKESRRSSRDEQAEEEEEEERRRRKKKKHGDRGKDKERDSKEKHSKEKEKSKRK 83
Query: 363 ASPASLRKAS----FSPPTEVAKW 422
++ S F+ E A W
Sbjct: 84 HKDDDFKEISKDDYFAKNNEFATW 107
>01_06_1009 +
33796450-33796824,33796926-33796970,33797069-33797182,
33797679-33797759,33798038-33798211,33798353-33798438,
33799157-33799901
Length = 539
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Frame = -3
Query: 426 APISPPPWA--VRSSPSSKT---PATRPASA*TVSGCHCSL 319
+P SPPP +R P+S T ATRP+S ++ CHC L
Sbjct: 5 SPPSPPPPLPPLRRRPASPTLLAVATRPSSLLSLPHCHCGL 45
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 527 PFSIVQIATSRHGR-QFRVHPSFVIRFCFAIEASRRP 420
P S +I T++ G ++R HP ++ ++C A E R P
Sbjct: 211 PISEYEIPTNKDGHIEYRAHPFWMQKYCPAHETDRTP 247
>12_02_0879 + 23960084-23961551,23961796-23962184
Length = 618
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +3
Query: 102 SVKVPITSTLISDNDRTRIYKVVRFINRKPQKGSIQIDLTSRAKKTSKYTETERREAKRP 281
SVK + T + K+VR ++RK +I+ S+ + +K+ R+ K
Sbjct: 282 SVKPKVKETSTATRSNASSQKIVRTLDRKASGTTIESSNGSKVVRATKF----NRDKKFR 337
Query: 282 PEIASGVDKKPDIK 323
+AS V K +IK
Sbjct: 338 STVASNVPKVKEIK 351
>03_04_0157 + 17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 353 EAGRVAGVFEEGELLTAHGGGEMG 424
+AG + V+ +G +L HGG EMG
Sbjct: 1068 QAGALVQVYTDGTVLVTHGGVEMG 1091
>03_05_0647 + 26390924-26391259
Length = 111
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 523 KGPG*WR-RLERHWNAESIARNW 588
+G WR RLERHW E R W
Sbjct: 65 RGVARWRVRLERHWQEEPERRRW 87
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 492 RPPVSCSPKLRNTVLFRD*GK*APISPPPWAVRSSPSSKTPATR 361
R PVS SP R + + A +PPPW V P P+ R
Sbjct: 291 RGPVSASPAARQSCV-------AASAPPPWCVPPPPRPAPPSRR 327
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 435 GK*APISPPPWAVRSSPSSKTPATRPASA*TVSGC 331
G AP PPP A + + + TPAT +SA C
Sbjct: 338 GPPAPPPPPPPAAKRTSRTSTPATTSSSAPASGPC 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,848,328
Number of Sequences: 37544
Number of extensions: 376742
Number of successful extensions: 1374
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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