Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j05
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.6  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 138 DNDRTRIYKVVRFINRKPQKGSIQIDLTSRAKKTSKYTETERREAK 275
           DNDR+RI ++ R    K ++ S ++      ++T    +T+    K
Sbjct: 22  DNDRSRIARLGRDDGGKSRQSSFEVTSLLMREETEDAEDTQTLNLK 67


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 181 LMNLTTLYILVRSLSDISVLVIGTLTDLPFF 89
           +   T  Y+   ++SD+ +LV+G   +L  F
Sbjct: 71  MQTATNYYLFSLAISDLILLVLGLPNELSLF 101


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = +2

Query: 362 RVAGVFEEGELLTAHGGGEMGAYLPQSRNKTVLRSLGEHETGGRVERLRFER*RKD 529
           ++ G+    E     G G +GAY P+   K   +   +    G+  + +  + RKD
Sbjct: 180 QLQGISTPVEAHLRKGRGAIGAYGPEKGPKVPEKKKEDEIDEGKESKTKLSQWRKD 235


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/52 (23%), Positives = 20/52 (38%)
 Frame = +3

Query: 279 PPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVAKWAPTC 434
           PP   +    +P  +N G   +   K++ S  SL     +    V   + TC
Sbjct: 529 PPAKGAAAAGQPSKRNGGETNKQELKRLKSTVSLLPLPLARTPSVMSASSTC 580


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 192 QKGSIQIDLTSRAKKTSKYTETE 260
           ++GS+ + +TS+     + T+TE
Sbjct: 398 ERGSMTVSVTSKPSTMERQTQTE 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,429
Number of Sequences: 438
Number of extensions: 3627
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)