Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j03
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    29   0.48 
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.6  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   4.5  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   7.9  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   7.9  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    25   7.9  

>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 209 IFSSDHMSHPSYWLF-HVWSLILLYYCIPVVASW 111
           + SSDH +HP  W +   WS++ ++  + +   W
Sbjct: 63  LISSDHPAHPQNWHWAKRWSIVFMFCLMQIYVIW 96


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 185 HPSYWLFHVWSLILLYYCIPVV 120
           +P YW F +  L+ L+YC  V+
Sbjct: 65  YPEYWAFKLVELLSLFYCAYVM 86


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +2

Query: 506 YLRRMKPDELELLFRGYADLPARSLQENKES--SQIIFPFAQSVTKAIKQENVDHDKGMA 679
           Y+ R  PD++ LLF  Y  L A  + +  +S  +++       V ++         K   
Sbjct: 129 YISRSFPDQISLLFSRYCYLIASKIDDLLDSHPNEVFKETLICVIQSAVHSQASSTKAQT 188

Query: 680 NFLH 691
            FLH
Sbjct: 189 QFLH 192


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 422 ETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRMKP 526
           E   VP  +  +RNS R  H       PYL+  +P
Sbjct: 90  ENRDVPSILENYRNSKRKSHNFSSSNTPYLKLHRP 124


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 356 YAPNLHLSVIPVPHNKEQG 300
           Y P    S++P+P NK +G
Sbjct: 333 YGPTQEQSILPLPENKHEG 351


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
 Frame = +2

Query: 185 GSCDLKKKSNNSLQMNPVASGDNVTTGLSAHRL----KEELPLLVPCCEGRELQISEDLV 352
           GS ++ +K+N    +    S + +T+G +A  L    KE+    V   E  ELQ   +  
Sbjct: 11  GSLEVSEKTNQPKFIKRSQSSETITSGETASELMQDEKEQSNGAVGSIEDEELQRLRE-N 69

Query: 353 RSGLSAISVKHDSALQCLSMSNCETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRMKPDE 532
           ++ + A+S K +S  + L +   E L++   +VK        +    K V   R +    
Sbjct: 70  QASVEALSKKPESIDRELGV---EALEI-DNVVKSDEEKEDPNGASSKTVK-ARPLPAGS 124

Query: 533 LELLFRGYADLPARSLQENKESSQ 604
           +  +    A +PARS+  +  ++Q
Sbjct: 125 VHRVTTHMAPIPARSIGSHDTTTQ 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,912
Number of Sequences: 5004
Number of extensions: 56320
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)