Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11j02
         (438 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3244|AAF46744.1|  110|Drosophila melanogaster CG10320-P...    85   3e-17
AF220096-1|AAF26436.1|  380|Drosophila melanogaster homeobox pro...    29   2.1  
BT023211-1|AAY55627.1|  425|Drosophila melanogaster IP10727p pro...    28   6.4  
AE013599-2989|AAF57488.2|  425|Drosophila melanogaster CG11788-P...    28   6.4  

>AE013599-3244|AAF46744.1|  110|Drosophila melanogaster CG10320-PA
           protein.
          Length = 110

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = +2

Query: 98  YTVPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHP-GFGTRWQRARKFFFRG 274
           YTVPH S + V+ +PQL E+++AL  +GLKDPW+RNE WRY P  FGT   R   F FRG
Sbjct: 9   YTVPHASTYKVESVPQLVEVKEALGRQGLKDPWLRNEVWRYEPKAFGTHRSRLNTFLFRG 68

Query: 275 FPIGLGLTVITVALD 319
             +G    + TVA++
Sbjct: 69  LGVGFCAFLATVAVE 83


>AF220096-1|AAF26436.1|  380|Drosophila melanogaster homeobox
           protein Scarecrow protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 322 FIQSHCDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISD 197
           + Q+H   C+ Q+  K+  E+   + PAS+  RV  P L+ D
Sbjct: 212 WFQNHRYKCKRQAKRKAMAEQNQHNQPASSPRRVAVPVLVKD 253


>BT023211-1|AAY55627.1|  425|Drosophila melanogaster IP10727p
           protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 66  KQWVVTDMGPRTQCLTTPSL 125
           K+W + +M P  +C TTP+L
Sbjct: 381 KRWTMEEMEPYIECFTTPNL 400


>AE013599-2989|AAF57488.2|  425|Drosophila melanogaster CG11788-PA
           protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 66  KQWVVTDMGPRTQCLTTPSL 125
           K+W + +M P  +C TTP+L
Sbjct: 381 KRWTMEEMEPYIECFTTPNL 400


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,840,548
Number of Sequences: 53049
Number of extensions: 413624
Number of successful extensions: 1155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1396986582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)