Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i23
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-5|AAK68311.1|  234|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U64598-1|AAK39215.2|  330|Caenorhabditis elegans Serpentine rece...    27   9.3  
AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.     27   9.3  
AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine re...    27   9.3  
AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine re...    27   9.3  

>U28991-5|AAK68311.1|  234|Caenorhabditis elegans Hypothetical
           protein F08F8.8 protein.
          Length = 234

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 319 TSQENRPNPFVNNRPGKKWNSFLKRNPEL 405
           +S ENR NP +NNR  + ++ +LK N  +
Sbjct: 127 SSNENRNNPILNNR-ARGYDMYLKENDHI 154


>U64598-1|AAK39215.2|  330|Caenorhabditis elegans Serpentine
           receptor, class v protein6 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 21/82 (25%), Positives = 39/82 (47%)
 Frame = -2

Query: 568 HEEFQLILTLFLESIELEV*IWTAWLIEFTVEFRLSVPTIFFALFKTSIAILILLTPDFV 389
           H +  L+   F + +EL+      + IEF++  R    T F+ LF+    + I + P   
Sbjct: 29  HRKTSLLGGTFFKLVELQFYAELVFFIEFSITMRFRKYTDFYMLFEPD-TVFIGIIPRI- 86

Query: 388 *EMSSISSLAYYLQMG*VCFLG 323
                IS + YY+++  V ++G
Sbjct: 87  -----ISGIHYYIKL--VVYIG 101


>AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 247 DWCIALAECGFPLNVMILYTVHNITSQENRPNPFVNNRPGKKWNSF 384
           ++CIA+ E   P  +++L  + N       PN +   RP  KW SF
Sbjct: 27  EYCIAVGENSAPAFLILLKELANCL-----PNVYFMKRPPIKWGSF 67


>AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform b protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 526 IELEV*IWTAWLIEF--TVEFRLSVPTIFFALFKT 428
           I  E+ +W  W      T+ F L+  TI+ ALFK+
Sbjct: 3   ITFELPVWLVWFYHCMGTISFLLNTFTIYLALFKS 37


>AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform a protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 526 IELEV*IWTAWLIEF--TVEFRLSVPTIFFALFKT 428
           I  E+ +W  W      T+ F L+  TI+ ALFK+
Sbjct: 3   ITFELPVWLVWFYHCMGTISFLLNTFTIYLALFKS 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,975,465
Number of Sequences: 27780
Number of extensions: 305562
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)