Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i22
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   2.9  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   6.8  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    25   9.0  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 38  RSVSFYSMVALNV*RNLVGSRIRSFTSIKVTPPFVHILSIFINSV 172
           +++ F+ ++ L+   N     I +FT IKVT P  +++S+   S+
Sbjct: 295 QAIKFFIVLILSSLSNFY-LNIATFTQIKVTSPVTYMISVSARSI 338


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 531 RASATRWLRFD*FLIAPVDGSNILPILYFIFNEEFCK 421
           R  A  W+     LI  +   N+LP++ F+F+++ C+
Sbjct: 532 RRDANTWVH----LIGHLHKQNLLPVIVFVFSKKRCE 564


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +2

Query: 305 KAFNYCITKHRN*ENNKPYKSLFVIGKLIKFYQSMVSENLQNSSLK 442
           +AF  CI        ++ + + +++G L K Y  +   +L N+ L+
Sbjct: 168 RAFTICINDRAPLSTSRKWGAYYIMGLLFKLYLRLDCVHLTNNVLR 213


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 489 IAPVDGSNILPILYFIF 439
           +AP  G  I+P+L+FIF
Sbjct: 398 VAPPTGYEIIPVLWFIF 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,162
Number of Sequences: 5004
Number of extensions: 61082
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)