Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i22
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381...    29   5.4  
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    29   5.4  

>11_04_0340 -
           16536571-16536705,16536820-16536951,16537265-16538106,
           16538480-16538940,16539032-16540314,16540423-16541627,
           16541857-16542157
          Length = 1452

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 458 GNMLLPSTGAMRN*SKRSHLVADARKHF 541
           GN+ +P+  AM N  K  HL+ADA+ HF
Sbjct: 670 GNISVPA--AMNNLVKLRHLIADAKVHF 695


>06_03_0635 -
           22971502-22973840,22974112-22974403,22974639-22975162,
           22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 601 LLYIDNTHKLVIDEQLKHSTKMFAGVGH*MASLR 500
           LL   + HKL++D  + HSTK ++   H + +LR
Sbjct: 741 LLNKSHLHKLILDWNVNHSTKDYSQEEHILENLR 774


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,385,951
Number of Sequences: 37544
Number of extensions: 316420
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)