Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i20
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              32   0.40 
SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_384| Best HMM Match : IBR (HMM E-Value=1.1e-12)                     29   2.8  
SB_31156| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)             28   6.6  
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)                    28   6.6  

>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 19/83 (22%), Positives = 39/83 (46%)
 Frame = +3

Query: 360 DRGKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDYIFYDYNNPKEVPPDVHH 539
           DR  V +++ P +      +I DR  V + + D  + +H P  +++  +     PP V+H
Sbjct: 531 DRKNVIVVNRPPMIYHPPPEIYDRPDVVVHQPD--YVIHRPSVVYHQPSVVVHRPPIVYH 588

Query: 540 SYDLVVADPPFLSEECITKTSET 608
              +V   PP +  + +  + +T
Sbjct: 589 QPPVVFHQPPPMVRQPVMHSHDT 611



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/95 (23%), Positives = 40/95 (42%)
 Frame = +3

Query: 324 HSLVKVIDKVLDDRGKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDYIFYDY 503
           +S  K  DK   D+    ++  P +      +I DR  V +   D    VH P  +++  
Sbjct: 680 NSTAKKSDK--GDKKNTVIVQRPPMIYHPPPEIYDRPDVVVHRPD--LVVHRPSIVYHQP 735

Query: 504 NNPKEVPPDVHHSYDLVVADPPFLSEECITKTSET 608
           +     PP ++H   ++   PP L  + +  + ET
Sbjct: 736 SVVVHRPPIIYHQPPVMFHQPPPLVHQPVLHSHET 770


>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1154

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 340 TLTRECTVFSSYQN*LSCQFSSNKIFSVNFLSASSF 233
           T+T  C VF    N LSC+     IF V FL+   F
Sbjct: 853 TMTFTCFVFFDMFNALSCRSQEKSIFQVGFLTNRMF 888


>SB_384| Best HMM Match : IBR (HMM E-Value=1.1e-12)
          Length = 259

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 182 SKCLC*QCGHVFICFHCTKRCSFSLTL 102
           ++ +C  C H+F C+HC K   FS+ L
Sbjct: 199 AQMMCGNCKHIF-CWHCLKGLDFSVDL 224


>SB_31156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 675 PLLYPSLWYRCIKLFYLSKAI*LSPMFLLC-ILQKGMVGRPLLN 547
           PL  P++   C+KL+Y   +  +   F+L    Q G+ G P LN
Sbjct: 30  PLFEPTMTSACMKLYYPCSSATMDSCFVLFRTCQHGIAGLPQLN 73


>SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)
          Length = 576

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 420 IGDRGTVTLLEYDRRFEVHGPDYI--FYDYNNPKEVPPDVHHSYDL 551
           +G R  ++L+  D RF+     YI  ++DYN+ K+  P    SY +
Sbjct: 456 VGIRYQLSLMRGDIRFKPDSAKYIPVYFDYNSSKKEVPKFLSSYTI 501


>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
          Length = 475

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 492 FYDYNNPKEVPPDVHHSY 545
           F D+  PK+ PP +HHSY
Sbjct: 65  FSDFPIPKDYPPFMHHSY 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,255,352
Number of Sequences: 59808
Number of extensions: 402321
Number of successful extensions: 1149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)