Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i19
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    29   0.31 
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   6.7  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    25   6.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   8.9  

>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 285 CPNWKPKSLENSAFAPGTTEGCTN*GCHDITEIQTNIRTTTVQQ 416
           C +W   S+ +SA  PG+         H+ TE   NI++  V Q
Sbjct: 375 CGDWAGSSVYSSAGCPGSCNDFVGNNPHNFTEAYWNIKSLAVYQ 418


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 107 KISIGSICVAKFSPSDT*ARPYSIYLQKESKYYL-NGFGVECSCS*VLYIFNAHLV 271
           ++SI  + V   +P     R ++  L +    YL N   + C C  V++  +AH V
Sbjct: 297 RMSIAEMVVPYGNPEHPHQRKHAFDLGEYGAGYLTNPLALGCDCKGVIHYLDAHFV 352


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 282 YDTRTKCALNIYSTHEHEHSTPNPFR 205
           YD++ + AL +YS H    ++PN  R
Sbjct: 34  YDSKEEGALPLYSDHARLSNSPNTHR 59


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 28   DEVGLPLPTIIAGSQPVQRIFLN-FHRQNLH 117
            D V  PLP  +AGS P  R   N +   NLH
Sbjct: 1809 DSVSPPLPPFVAGSNPNARNNNNPYFYGNLH 1839


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,438
Number of Sequences: 5004
Number of extensions: 45498
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)