Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i19
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916...    31   0.73 
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298...    29   2.9  
03_02_0129 + 5785583-5787163,5787923-5788090                           28   3.9  
03_05_0090 - 20694243-20694283,20694300-20694377,20695114-20695546     27   8.9  

>06_01_1113 -
           9164953-9165044,9166453-9166586,9166624-9166734,
           9166815-9167066,9167152-9168186,9168313-9169187,
           9169476-9169673
          Length = 898

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -2

Query: 113 RFCLWKFRKILCTGCDPAIIVGSGNPTSSKQRT 15
           +F LW  R I+ T   PA  VGS  P+SS+ RT
Sbjct: 426 QFILWHRRDIILTAAVPA--VGSSTPSSSQART 456


>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
            31029955-31030017,31031597-31031704,31031772-31031836,
            31031928-31032015,31032104-31032157,31032234-31032380,
            31033358-31033429,31034077-31034226,31034317-31034430,
            31034762-31034875,31035925-31036077,31037437-31037529,
            31038202-31038318,31038984-31039086,31039192-31039376,
            31039448-31039522,31040451-31040534,31041547-31041588,
            31041668-31041847,31042109-31042162,31042239-31042280,
            31042869-31042967,31043040-31043174,31043325-31043427,
            31045061-31045134,31045227-31045270,31045393-31045471,
            31045592-31045705,31045842-31045946,31046027-31046161,
            31046447-31046546,31046870-31046883,31046936-31047004,
            31047079-31047182,31047299-31047347,31047931-31048023,
            31048102-31048210,31048619-31048755,31048851-31048928,
            31049015-31049104,31049402-31049467,31049546-31049638,
            31049711-31049839,31050024-31050122,31051366-31051512,
            31051605-31051910
          Length = 2050

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 280  VHARTGNRSRLKIQPSLPAPRRVVQTRAVTTLPK 381
            V A      R    P  PA  +VV+ RAV+TLPK
Sbjct: 1610 VDASAATAGRQVATPPRPAQVKVVEERAVSTLPK 1643


>03_02_0129 + 5785583-5787163,5787923-5788090
          Length = 582

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 119 QWRFCLWKFRKILCTGCDPAIIV 51
           +W F L  FR++L  G  P+IIV
Sbjct: 342 KWEFALTTFRRMLSAGMKPSIIV 364


>03_05_0090 - 20694243-20694283,20694300-20694377,20695114-20695546
          Length = 183

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 274 CIVHARTGNRSRLKIQPSLPAPRRVVQT-RAVTTLPKFKRILGLQQF 411
           C+V    G    + + PS+P  RRV++  RA+    +++    L+ F
Sbjct: 25  CVVMYAEGEAQPMMVWPSVPEARRVIERFRALPQKDQYENTTNLEGF 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,356,604
Number of Sequences: 37544
Number of extensions: 266947
Number of successful extensions: 528
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)