Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i19
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15)           27   9.2  
SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2)                     27   9.2  

>SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15)
          Length = 711

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 419 ALLN-CCSPNIRLNFGNVVTAL 357
           +LLN CC PN ++ FG V+ +L
Sbjct: 103 SLLNSCCHPNTKVEFGTVLPSL 124


>SB_39167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 372 CRDSPSLYNPPWCRERRLNFQATSVSSSGMYDTRTKC 262
           C D+ S  N   C +  L   ATS + +  Y+  T C
Sbjct: 510 CNDATSYNNATSCNDATLYNNATSCNDATSYNNATSC 546



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 372 CRDSPSLYNPPWCRERRLNFQATSVSSSGMYDTRTKC 262
           C D+ S  N   C +  L   ATS + +  Y+  T C
Sbjct: 534 CNDATSYNNATSCNDATLYNNATSCNDATSYNNATSC 570


>SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2)
          Length = 1094

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 306 TSVSSSGMYDTRTKCA-LNIYSTHEHEHSTPNP 211
           +S ++S M+ T T+ + +  YST +H  S PNP
Sbjct: 160 SSQANSHMFTTSTESSGMGSYSTSDHSVSGPNP 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,796
Number of Sequences: 59808
Number of extensions: 328056
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)