Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i19
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.3  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   7.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   7.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 306  TSVSSSGMYDTRTKCALNIYSTHEHEHST 220
            T+VSS    D R   + +IYS+ + ++ST
Sbjct: 1316 TTVSSGSSEDHRRPLSEHIYSSIDSDYST 1344


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 326  RSRHHGGLYKLGLSRHYRNSN 388
            +S H+GG    G + HYR ++
Sbjct: 1425 KSGHNGGASLTGYTLHYRTAH 1445


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 326  RSRHHGGLYKLGLSRHYRNSN 388
            +S H+GG    G + HYR ++
Sbjct: 1421 KSGHNGGASLTGYTLHYRTAH 1441


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 279 RTCPNWKPKSLENSAFAPG 335
           R CPN  PK L     APG
Sbjct: 52  RFCPNVVPKPLCIKICAPG 70


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 279 RTCPNWKPKSLENSAFAPG 335
           R CPN  PK L     APG
Sbjct: 52  RFCPNVVPKPLCIKICAPG 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,361
Number of Sequences: 438
Number of extensions: 2990
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)