Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i19
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26510.1 68414.m03231 F-box family protein contains F-box dom...    29   1.4  
At4g01780.1 68417.m00233 XH/XS domain-containing protein contain...    29   2.5  
At1g73850.1 68414.m08550 expressed protein                             29   2.5  
At3g49070.1 68416.m05361 expressed protein similar to At14a (GI:...    27   7.5  
At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containi...    27   9.9  

>At1g26510.1 68414.m03231 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 686

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -1

Query: 378 R*CRDSPSLYNPPWCRERRLNFQATSVSSSGMYDTRTKCALNIY 247
           R C + PS +     +++RL F ++S SSS ++ TR  C L+ Y
Sbjct: 420 RTCHNLPSSFKS---KDQRLYFFSSSSSSSTVFSTRLTCPLSPY 460


>At4g01780.1 68417.m00233 XH/XS domain-containing protein contains
           Pfam profiles PF03469: XH domain, PF03468: XS domain
          Length = 456

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
 Frame = +1

Query: 160 SSTLFNL--FTERI*ILSK---WIRRRMFMFVSTVYIQCTFSTCIVHARTG---NRSRLK 315
           S TLF +   T  + IL K    +  ++  F+  + +QC FS C+  A TG   N    K
Sbjct: 30  SETLFKIVIITRSLCILGKVHTLLTFKVLTFLLKIELQCVFSDCVYVAETGIVVNIPTTK 89

Query: 316 IQPSLPA 336
            Q   PA
Sbjct: 90  AQDGRPA 96


>At1g73850.1 68414.m08550 expressed protein 
          Length = 575

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 303 SVSSSGMYDTRTKCALNIYSTHEHE 229
           ++S  G+ +  TK   N+Y THEHE
Sbjct: 34  NISQGGVNNQHTKEFNNVYQTHEHE 58


>At3g49070.1 68416.m05361 expressed protein similar to At14a
           (GI:11994571 and GI:11994573) [Arabidopsis thaliana]
          Length = 416

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 82  RIFLNFHRQNLHWKHLRSKIFSKRHLSSTLFNLFTERI*ILSKW 213
           ++  N H     ++ L+ K  S+ H S  L + FTE    +SKW
Sbjct: 170 QLLKNIHHLRSKYESLKPKFHSENHNSLALIDQFTE----ISKW 209


>At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 534

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 317 FSLRSRHHGGLYKLGLSRHYRNSNEY*DYNS-SAVLVYEN 433
           ++L+  HH GL   G  R  R S     YNS    LV EN
Sbjct: 163 YALKGSHHNGLEVFGFMRRLRLSPSQSAYNSLLGSLVKEN 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,097,702
Number of Sequences: 28952
Number of extensions: 224443
Number of successful extensions: 432
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)