Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i18
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31340.1 68414.m03835 ubiquitin family protein contains INTER...    43   2e-04
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER...    40   0.002
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER...    38   0.005
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ...    31   0.73 
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta...    30   1.7  
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu...    30   1.7  
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)     29   2.9  
At5g54180.1 68418.m06746 mitochondrial transcription termination...    28   6.8  
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER...    27   8.9  

>At1g31340.1 68414.m03835 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 156

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 28/70 (40%), Positives = 36/70 (51%)
 Frame = +3

Query: 309 ITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNI 488
           I VK L G E  IDI P+  I  +K  V  K  IP  QQ+         DD T + Y NI
Sbjct: 79  IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY-NI 137

Query: 489 KEGTKLNLVV 518
           + G+ L+LV+
Sbjct: 138 EGGSVLHLVL 147


>At2g35635.1 68415.m04370 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 154

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 27/70 (38%), Positives = 35/70 (50%)
 Frame = +3

Query: 309 ITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYPNI 488
           I VK L G E  IDI P+  I  +K  V  K  IP  QQ+         DD T + Y  I
Sbjct: 79  IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYA-I 137

Query: 489 KEGTKLNLVV 518
           + G+ L+LV+
Sbjct: 138 EGGSVLHLVL 147


>At5g42220.1 68418.m05139 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 879

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 24/101 (23%), Positives = 44/101 (43%)
 Frame = +3

Query: 297 SKMKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQM 476
           S +++ +K L        +  +  +   K  +A +  +PV QQ+         DDH +  
Sbjct: 22  STLELNIKTLDSRTYTFQVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSE 81

Query: 477 YPNIKEGTKLNLVVKKPESLYDASFKHYKRQGMSDKDAANT 599
           Y +++ G  L+L+V++P     A       QG +  D  NT
Sbjct: 82  Y-HLENGHTLHLIVRQPAE--SAPSSGTPSQGATANDGNNT 119


>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
           profile: PF00240 ubiquitin family
          Length = 158

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +3

Query: 303 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 482
           M I +K L G   ++++     I  +K  +  K  IPV+QQ+         D  T+  Y 
Sbjct: 86  MFIFIKTLTGRRIVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTLADY- 144

Query: 483 NIKEGTKLNLV 515
           NI+  + L+L+
Sbjct: 145 NIQNDSILHLI 155


>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
           putative almost identical to 26S proteasome AAA-ATPase
           subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
           almost identical to a member of conserved Sug1 CAD
           family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
          Length = 419

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/47 (36%), Positives = 30/47 (63%)
 Frame = +3

Query: 240 VLKTPGSFVTQYFKTVKIISKMKITVKQLQGGECLIDIYPSMLISEL 380
           +L+ PGS+V +    VK++ K K+ VK    G+ ++DI  S+ I++L
Sbjct: 77  LLQEPGSYVGE---VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKL 120


>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
           polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
           thaliana] (Genetics 139 (2), 921-939 (1995))
          Length = 631

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = +3

Query: 303 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 482
           ++I  K L      +D+  S  I  +K  +  K  IP++QQ+         D  T+  Y 
Sbjct: 3   IQIYAKTLTEKTITLDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADY- 61

Query: 483 NIKEGTKLNLVVK 521
           NI++ + L+LV++
Sbjct: 62  NIQKESTLHLVLR 74


>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
          Length = 419

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/47 (34%), Positives = 30/47 (63%)
 Frame = +3

Query: 240 VLKTPGSFVTQYFKTVKIISKMKITVKQLQGGECLIDIYPSMLISEL 380
           +L+ PGS+V +    VK++ K K+ VK    G+ ++DI  S+ I+++
Sbjct: 77  LLQEPGSYVGE---VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKI 120


>At5g54180.1 68418.m06746 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 500

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 540 DASFKHYKRQGMSDKDAANTANKLLRIVQEKFDKMSWDEVDRLC 671
           D+  KH   + +  +    + NKLL +  E+F K + D ++ +C
Sbjct: 457 DSRIKHRYEEKLKSRGENMSLNKLLTVSAERFSKAA-DNIEMIC 499


>At1g53950.1 68414.m06145 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 216

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 303 MKITVKQLQGGECLIDIYPSMLISELKRHVARKLHIPVEQQK 428
           M I +K L G     ++  S  I ELK     K  IPVEQQ+
Sbjct: 50  MMIFIKTLTGRTNTYEVKGSDTIRELKAKHEEKEGIPVEQQR 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,141,025
Number of Sequences: 28952
Number of extensions: 244914
Number of successful extensions: 556
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)