Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11i17
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 28 1.1
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 28 1.1
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 26 4.6
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.6
SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|... 26 4.6
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 8.0
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|... 25 8.0
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 8.0
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.0
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 326 YAINI-YTKHSSEAISQEEFQRLNKEDWTKKTTQEIFEIFPIFGKYCSQHSLCISSEIFD 502
Y I I Y ++ S ++E F + + D + EI+ I Y QH S E+F
Sbjct: 442 YGIGILYDRYGSHEHAEEAFMQCLRMDPNFEKVNEIYFRLGII--YKQQHKFAQSLELFR 499
Query: 503 NFIDN 517
+ +DN
Sbjct: 500 HILDN 504
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 467 QHSLC----ISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRNYIEVWA 634
QH+LC ISS DNF+ L D Q + L +L N P T+ + N ++
Sbjct: 969 QHTLCTIDCISSAKIDNFLTKLVDLKQPGLNKLLDSLLSLSN--PSTSLLTDENTVDDNK 1026
Query: 635 ALDDECLKRLKNWSHDEMLSFISL 706
E L +++ ++L+ + L
Sbjct: 1027 VSSVEALSNIQSAIVADLLTSLFL 1050
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 164 RKLLITSIFRLQCVSQFKLKPGYTRSIHSST-GLFIKMYMEKENEYAYSVLENKGYAINI 340
+ L + S + V P + + H+S + Y++ EN++ + V N+ IN+
Sbjct: 175 KNLALASSHNIHIVDLNHRNPIDSLTTHTSMINSVVFQYLKDENKFYFGVSANQDRFINL 234
Query: 341 YTK 349
Y+K
Sbjct: 235 YSK 237
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 317 NKGYAINIYTKHSSEAISQEEFQRLNKED 403
NKGYA +I + HS+ S E+F+++ D
Sbjct: 412 NKGYAYSITSSHSNH--SNEKFEQIPSPD 438
>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 174
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 233 TRSIHSSTGLFIKMYMEKENEYAYSVLENKGYAINIYTKHSSEAISQEEFQRLNK 397
T++IHS L + E + + + K I + K S+ +EEF+RL+K
Sbjct: 70 TKTIHSEVILSLSPKTEISSAFRQFSMTKKSKNI-VVVKIDSKLTEEEEFERLDK 123
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 374 EEFQRLNKEDWTKKTTQEIFEIFPIFGKYCSQHSLCISSE 493
EE +E W + + IF IF IFG + ++ + E
Sbjct: 1435 EESDDFTEETWEVVSRKFIFPIFSIFGPEADEATVMLRDE 1474
>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +2
Query: 629 WAALDDECLKRLKNWSHDEMLSFI 700
W D L +K W HDE+L +
Sbjct: 240 WVDADSWMLPVMKTWPHDEILEIL 263
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 8.0
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 10/137 (7%)
Frame = +2
Query: 266 IKMYMEKENEYAYSVLENKGYAINIY-TKHSSEAISQEEFQ--RLNKEDWTKKTTQEIFE 436
I ++++ + S L Y +++ T H AIS Q +N K + E
Sbjct: 220 IGLFVDSQGNVTRSTLTFSFYPKHVFSTSHYVFAISSSSLQIIDINTLSLVKSINLKDDE 279
Query: 437 IFPIFGKYCSQHSLCISSEIFDNF-------IDNLTDTIQMATDSQLKTLFYSLNMWPET 595
F + S H C +IF F +DTI+ A+ S+ +F + W
Sbjct: 280 SFSFISRLTSVH-FC-DRQIFSKFSAVNTASTSKTSDTIERASFSKPSFIFLTNKSWGFG 337
Query: 596 ASIRTRNYIEVWAALDD 646
A N +E + D
Sbjct: 338 AEAHFMNKLEFSITIGD 354
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 55 EVNNNGEITCTNTRLKGSLDFVN*RIFKYEYFYKYWAK 168
+ N N I+ NTRL S + R+ KYWAK
Sbjct: 164 DCNINKTISTLNTRLMRSYVLCDPRVRPLIVMIKYWAK 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,110
Number of Sequences: 5004
Number of extensions: 64898
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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