Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i14
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   4.8  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    26   4.8  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    26   6.4  

>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 434 CFKSGGIHFPLIRKLICNK-ILWNFSLKLHRCLKIGPCHCMVY 309
           C +  G+      +L+ NK  L N +LKL+ C K G C  M +
Sbjct: 113 CMREDGL-VKYTNELLLNKETLNNEALKLYSCAKAGICRWMAF 154


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 470 SSHIQYLIFPS*CFKSGGIHFPLIRKLICNKILWN 366
           SS I Y IFP+    S GI F +    I  + +WN
Sbjct: 584 SSFIFYCIFPNHIQHSSGISFFVTLAEIMRRCMWN 618


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 431 FKSGGIHFPLIRKLICNKILWNFSLKLHRCLKIGPCHCMV 312
           F SG   + L R ++  K +  F     +C+ +  C C++
Sbjct: 220 FHSGVFSYKLFRAILIRKKIGQFPFGPMQCILVISCQCLI 259


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 600 FKYTVNTAGILSSFLTQSAELPEKLYIKLAVLP*KYDT 487
           F Y+  T GIL++FLT    +P  ++I L  +P  +DT
Sbjct: 131 FSYSSGTNGILATFLT---AIPPNIFILL--VPKSFDT 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,187
Number of Sequences: 5004
Number of extensions: 56308
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)