Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i14
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282...    33   0.31 
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308...    31   1.2  
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224...    30   2.2  

>10_08_0838 -
           20927020-20927207,20927288-20927491,20927654-20928297,
           20928549-20928788,20928884-20928978,20929087-20929434,
           20929824-20930042,20930422-20930487,20931191-20931362,
           20931456-20931703,20931933-20932073,20932238-20932330,
           20932421-20932471,20933571-20933693,20933793-20934035,
           20934131-20934211,20935245-20935340,20935535-20936320,
           20936443-20937012,20937322-20937427,20938102-20938206,
           20938311-20938432,20939321-20939413,20940081-20940104
          Length = 1685

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +2

Query: 539 NSADWVKKELNIPAVFTVYLNYENSVYPHRNNVKILTDIYSTILEETLHLTESLYEPL 712
           N  DW+K +LN  A     LN +  +  HR +    +D  +T LEE++ +TES  + L
Sbjct: 191 NDLDWLKYQLNEKANRLQDLNQQKHLLEHRISE---SDSVATYLEESMKVTESRVQSL 245


>03_02_0924 +
           12429764-12430120,12430562-12430637,12430803-12430849,
           12431850-12431962,12432056-12432129,12432258-12432353,
           12432440-12432559,12432660-12432893,12433486-12433634,
           12434145-12434301,12434387-12434542,12435359-12435735,
           12435871-12436020,12437071-12437253,12437440-12437643,
           12437869-12437975,12438253-12438406,12438796-12438917,
           12439541-12439787
          Length = 1040

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 554 VKKELNIPAVFTVYLNYENSVYPHRNNVKILTDIYSTILEE 676
           VK EL   +V  VY   E  +      ++ +TD++S I+EE
Sbjct: 820 VKNELEENSVVEVYFPVEQDIGKDATKLRAITDLFSNIIEE 860


>01_07_0239 +
           42222024-42222133,42222220-42222301,42222396-42222486,
           42222702-42222814,42222912-42222984,42223080-42223178,
           42223201-42223406,42223693-42223832,42223912-42223969,
           42224067-42224137,42224207-42224741
          Length = 525

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 554 PSLQSYLRSYILNLQYCHKNMTPHEFYESSHI 459
           P ++ Y+R  +  L YCH N   H   + S++
Sbjct: 129 PQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNL 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,116,775
Number of Sequences: 37544
Number of extensions: 271111
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)