Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i14
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58200.1 68416.m06489 meprin and TRAF homology domain-contain...    30   1.4  
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ...    29   2.4  
At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK...    29   4.2  
At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK...    29   4.2  
At4g22940.1 68417.m03312 protein kinase family protein contains ...    28   5.6  
At5g37110.1 68418.m04454 hypothetical protein                          28   7.3  

>At3g58200.1 68416.m06489 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 319

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 434 IKMEILNTVCERIHKIHGVSYFYGNTASLIYNFSGNSADWVKKEL 568
           + + ++ T+C+ + ++       G+ A     FSG   DW++K+L
Sbjct: 220 VLLSLIETLCKSLEELSNDDLVGGDNALQYLKFSGFKVDWLEKKL 264


>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
           RNA helicase pNORF1 [Homo sapiens] GI:1885356
          Length = 1254

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 388 YVIKYCGISH*NCIVV*KLALVTVWYTNNLVKTP*IYESNQILR 257
           +  KYCGIS+  C+V   +A    W+ N+   T   +  N ++R
Sbjct: 138 HACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLVR 181


>At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK,
           putative similar to cyclin dependent kinase C
           [Lycopersicon esculentum] gi|15215944|emb|CAC51391
          Length = 513

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 554 PSLQSYLRSYILNLQYCHKNMTPHEFYESSHI 459
           P ++ Y++  +  L YCH N   H   + S++
Sbjct: 139 PQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNL 170


>At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK,
           putative similar to cyclin dependent kinase C
           [Lycopersicon esculentum] gi|15215944|emb|CAC51391
          Length = 505

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 554 PSLQSYLRSYILNLQYCHKNMTPHEFYESSHI 459
           P ++ Y++  +  L YCH N   H   + S++
Sbjct: 139 PQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNL 170


>At4g22940.1 68417.m03312 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 458

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 554 PSLQSYLRSYILNLQYCHKNMTPHEFYESSHI 459
           P ++ Y+R  +  L +CH N   H   +SS++
Sbjct: 203 PQVKCYMRQLLRGLDHCHTNHVLHRDMKSSNL 234


>At5g37110.1 68418.m04454 hypothetical protein
          Length = 1307

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 533 SGNSADWVKKELNIPAVFTVYLNYENSVYPHRNNVKILTDIYSTILEETLHL 688
           +G +AD  KK+     +    +   NS+ P+ ++++   D ++   EETLH+
Sbjct: 241 NGVNADKYKKKELRKEIIDAVIKLLNSINPYVSHLRTARDRFNANPEETLHM 292


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,357,883
Number of Sequences: 28952
Number of extensions: 254000
Number of successful extensions: 479
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)