Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i13
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   1.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.2  
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    27   2.9  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    26   3.8  
SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub...    26   5.1  

>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 173 CVLNEHTKINCM*CTFSGVALCLFIDSRNLQSCNYFGVPKMSQKDTA 313
           C+L  H  I C  C     A C  +D R   +     +P++S  DT+
Sbjct: 241 CLLAPHEVICCAFCPDRDGAFCTTLDGRWCHTICAIAIPEISFHDTS 287


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 423 GGIPTPFEDWSLVFTTSNGH 364
           GGIP  F+DW + +T    H
Sbjct: 441 GGIPISFKDWMISYTNRQKH 460


>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 511 FSCYNHLMFRYLGTYFSVISSV 446
           + CYNHL  R   T  SVI SV
Sbjct: 49  YVCYNHLQDRGFATPISVIKSV 70


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 368 PLEVVKTRLQSSKGVGIPPTQP 433
           PL+VVKTRLQS        TQP
Sbjct: 44  PLDVVKTRLQSESISQYSSTQP 65


>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
           subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 47  PSAKKIRFTTFTDFNINTCNKSDLCKNI 130
           PSA KI  T    F I T  +SDL  NI
Sbjct: 112 PSAAKIIATVTGQFTIETFQESDLIVNI 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,435
Number of Sequences: 5004
Number of extensions: 42114
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)