Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i13
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749...    28   5.2  
12_02_0372 + 18212948-18213821,18213887-18214030,18214128-182142...    27   9.1  

>07_01_0893 +
           7484598-7484744,7484837-7484902,7494387-7494530,
           7494860-7495235,7495904-7496017,7496282-7496454,
           7496562-7496669,7497311-7497377,7497791-7497904,
           7498121-7498257,7498727-7498813,7498962-7498986,
           7499044-7499266,7499770-7499947,7500039-7500152,
           7500249-7500380,7500488-7500588,7500720-7500933
          Length = 839

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 374 EVVKTRLQSSKGVGIPPTQPPPSDNTANNRKICSKIPK 487
           ++ + R Q    V      PP   N  NN  +CS++PK
Sbjct: 179 KIKEGRKQGGSNVAHNGNAPPLEQNHPNNTDVCSQLPK 216


>12_02_0372 +
           18212948-18213821,18213887-18214030,18214128-18214273,
           18214854-18214862
          Length = 390

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 422 PTQPPPSDNTANNRKICSKIPKH 490
           PT+PPPS +T   ++  S++ KH
Sbjct: 92  PTKPPPSSSTQPQQRHQSQVKKH 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,343,910
Number of Sequences: 37544
Number of extensions: 239779
Number of successful extensions: 779
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)