Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11i10
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 83 5e-17
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 28 1.6
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 28 1.6
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 27 2.7
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 25 8.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.3
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 25 8.3
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 25 8.3
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 25 8.3
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 82.6 bits (195), Expect = 5e-17
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 2/213 (0%)
Frame = +1
Query: 94 DVEMKNVESPAAVSDVETA-DVKKDADVLAVQDLREHIRQIDKAVTSKEPRFAMRVLRAL 270
D+++ +V V ET + + +QD+ +I + +A ++PR R LR
Sbjct: 7 DMQVDSVNQEENVDSGETKQNTVTEVPRTVLQDVEANIAALMQATKQRDPRLVYRSLRTT 66
Query: 271 PSTRRKLNGNVLRAIINQIYPA-SAEKETILSFVENPLPGAVEIEAPRSRSAPKQPVPEV 447
+ +LN +VL +I + Y ++ K +L ++ P G + + PEV
Sbjct: 67 SNICHRLNADVLGQLIKKYYSFDNSLKNELLELIDMPQNGD-DSSTSITNGNGNTIFPEV 125
Query: 448 DTYXXXXXXXXXXXXXXXEEATECSQQLMTKVTTQNRRTLDLIAAKCYFYHSRVFELTNK 627
D Y E E ++++ ++ + +RRTLD IAAK YFY+ FE N+
Sbjct: 126 DMYLQLLLSMTLYYNEKYEVGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNR 185
Query: 628 LDVIRGLLHARLRTSTLRNDYEGXAVIINCLLR 726
R L + RT++LR+D E A+++ LLR
Sbjct: 186 SVECRNTLLSVHRTASLRHDSETQAMVLTLLLR 218
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +1
Query: 130 VSDVETADVKKDADVLAVQDLREHIRQIDKAVTSKEPRFAMRVLRALPSTRRKLNGNVLR 309
+SD + VK D ++ L ++IR K TSKE R +L+ LP+ + + +
Sbjct: 676 ISDAYSVLVKFDDMEETLEVLLDYIR---KCSTSKEARIVYIILQNLPNISFRYQKKICK 732
Query: 310 AIINQIYP 333
+++ IYP
Sbjct: 733 LLLD-IYP 739
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 202 IRQID-KAVTSKEPRFAMRVLRALPSTRRKLNGNVLR 309
IR +D +A SK+P M V LP+ R KL NV R
Sbjct: 101 IRIVDIEAENSKDPVIKMNVQTTLPAYRSKLYKNVRR 137
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 27.1 bits (57), Expect = 2.7
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = +1
Query: 163 DADVLAVQDLREHIRQIDKAVTSKEPRFAMRVLRA---LPSTRRKLNGNVLRAIINQIYP 333
D DV+ V+D+ + +TS F + A +P T + + + I+
Sbjct: 98 DGDVV-VKDIEPTAGTVTTTITSGSHEFTTTLAEASGTVPGTVEVVEP-LAGTVTTTIHS 155
Query: 334 ASAEKETILSFVENPLPGAVEIEAP 408
S E T L+ +PG VE+ P
Sbjct: 156 GSVEYNTTLATASGTVPGTVEVVEP 180
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/49 (20%), Positives = 26/49 (53%)
Frame = -1
Query: 219 FIDLSDVFS*ILNS*YISIFLYIRCLNVTNSCRTFHIFHFNIFHWSHCI 73
F+ ++ +S + + ++ L++ C +++ FH F +H+S C+
Sbjct: 29 FLQMTPFYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYHYSLCL 77
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 112 VESPAAVSDVETADV-KKDADVLAVQDLREHIRQID 216
V S AV E A++ KKD ++ +QD+ E IR++D
Sbjct: 107 VRSRIAVLVNEWAEIMKKDPNMSLMQDICEKIRKLD 142
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 330 INLID-NSSQNVTV*LPASARQCSKYTHSESRFFRSNSFIDLSDVF 196
I ++D N S + L ++R CS+ HS +NSF+ L++ F
Sbjct: 2944 IKVLDLNDSIRFEIYLFLASRLCSEKQHSSDTHSLANSFVLLANEF 2989
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +1
Query: 211 IDKAVTSKEPRFAMRVLRALPSTRRKLNGNVLRAIINQIYP 333
IDK + S + + ++ + + L + + N++ +II+QI+P
Sbjct: 364 IDKIIVSNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHP 404
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 279 SARQCSKYTHSESRFFRSNSFIDLSDVFS 193
+A QCSK HS + F+ + I+LS+V +
Sbjct: 97 AADQCSKLVHSSNLFYNEPA-IELSNVIN 124
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 160 KDADVLAVQDLREHIRQIDKAVTSKEPRFA-MRVLRALPST 279
++ + + D++E R D +K+PRF+ R+LR + T
Sbjct: 124 EELSIKVIWDVKEESRLKDTVAYAKDPRFSKQRLLRMIVPT 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,738
Number of Sequences: 5004
Number of extensions: 54786
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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