Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11i10
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0131 - 21037698-21038210,21038293-21038532,21038679-210387... 88 8e-18
08_02_1505 - 27581466-27581978,27582054-27582293,27582527-275826... 76 3e-14
04_03_0245 - 13331603-13332111,13332653-13333025 30 1.6
04_03_1033 + 21861826-21863046,21863153-21863380,21863474-218637... 30 2.2
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 29 3.8
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887... 29 5.0
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 28 6.6
01_06_0966 - 33453963-33456692 28 8.7
>09_06_0131 -
21037698-21038210,21038293-21038532,21038679-21038789,
21038872-21038926,21039074-21039210,21039284-21039421,
21040304-21040494,21040625-21040703
Length = 487
Score = 87.8 bits (208), Expect = 8e-18
Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 3/215 (1%)
Frame = +1
Query: 91 EDVEMKNVESPAAVSDVETADVKKDADVLAVQDLREHIRQIDKAVTSKEPRFAMRVLRAL 270
EDVEM + + A + A +Q L+E I+ +KE R R +R
Sbjct: 3 EDVEMNDSQPQPAAAPPPAAST--------LQHLKEIASVIEAGSLTKEVRRISRAVRLT 54
Query: 271 PSTRRKLNGNVLRAIINQIYPASAEKETILSFVENPLPGA---VEIEAPRSRSAPKQPVP 441
+ RR+L + A + P S+E LS + G+ V++ AP ++ + K +P
Sbjct: 55 VALRRRLAARDVAAFLAFALPHSSEAFARLSSLLPKEDGSEMDVDLAAPAAQVSIKHGLP 114
Query: 442 EVDTYXXXXXXXXXXXXXXXEEATECSQQLMTKVTTQNRRTLDLIAAKCYFYHSRVFELT 621
E++ Y +EA C+ +T++ NRRT+D++A++ + Y+S V ELT
Sbjct: 115 EIEIYCYLLVLIFLIDNKKYDEAKACASASITRLKNLNRRTVDVLASRVFTYYSYVHELT 174
Query: 622 NKLDVIRGLLHARLRTSTLRNDYEGXAVIINCLLR 726
+ L IRG L A R +TL D G ++N LLR
Sbjct: 175 SSLAEIRGTLLALHRMATLHRDELGQETLLNLLLR 209
>08_02_1505 -
27581466-27581978,27582054-27582293,27582527-27582637,
27582732-27582786,27582880-27583016,27583092-27583229,
27583293-27583355,27584379-27584569,27584657-27584732
Length = 507
Score = 76.2 bits (179), Expect = 3e-14
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 16/227 (7%)
Frame = +1
Query: 94 DVEMKNVESPAAVSDVETAD----VKKDADVLAVQDLREHIRQIDKAV---TSKEPRFAM 252
DV+M + E AA A +K+ A V+ L + +R+I +AV + R A
Sbjct: 3 DVQMSDSEPQAAPPAAPAASALHHLKEIASVIEAGSLSKEVRRISRAVRLTVALRRRLAA 62
Query: 253 RVLRALPSTRRKLNGNVLRAIINQIYPASAEKETILSFV---------ENPLPGAVEIEA 405
R + A + + + + + S L F E+ +++ A
Sbjct: 63 RDVSAFLAFALPPSSEAYTRLTSLVPKGSGPGSLTLLFHCVYNDIIRREDDTEMDIDMAA 122
Query: 406 PRSRSAPKQPVPEVDTYXXXXXXXXXXXXXXXEEATECSQQLMTKVTTQNRRTLDLIAAK 585
P ++ + K +PE++ Y ++A C+ + ++ NRRT+D++A++
Sbjct: 123 PATQISIKHGLPEIEIYCYLLVLIFLIDQKKYDDAKACANASIARLKNLNRRTVDVLASR 182
Query: 586 CYFYHSRVFELTNKLDVIRGLLHARLRTSTLRNDYEGXAVIINCLLR 726
YFY+S V ELTN L IRG L A R +TL D G ++N LLR
Sbjct: 183 LYFYYSYVHELTNSLAEIRGNLLALHRMATLHRDELGQETLLNLLLR 229
>04_03_0245 - 13331603-13332111,13332653-13333025
Length = 293
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 355 ILSFVENPLPGAVEIEAPRSRSAPKQPVPEVDTY 456
+L V+N LPG E PR R PKQP ++D Y
Sbjct: 106 LLKLVKNILPGG-ETNCPRQR--PKQPGNDIDVY 136
>04_03_1033 +
21861826-21863046,21863153-21863380,21863474-21863704,
21863808-21864070,21864189-21864660
Length = 804
Score = 29.9 bits (64), Expect = 2.2
Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 6/140 (4%)
Frame = +1
Query: 253 RVLRALPSTRRKL-----NGNVLRAIINQIYPASAEKETILSFVENPLPGAVEIEAPRSR 417
R+ AL TR K NGN L A + + + + SF LPGA +P S
Sbjct: 248 RMNSALSDTRSKFFEAKENGNPLAASVANVSTPLSIGSSGSSFTAQSLPGAA--SSPSSS 305
Query: 418 SAPKQPVPEVDTYXXXXXXXXXXXXXXXEEATECSQQLMTKV-TTQNRRTLDLIAAKCYF 594
S KQP + + ++ KV +T + DL+
Sbjct: 306 SLMKQPTDNEQMLNEMLHEDDVSFGGNSDNVSSAEKEFQAKVKSTMEKAFWDLVTDSMKG 365
Query: 595 YHSRVFELTNKLDVIRGLLH 654
+L N + +R LH
Sbjct: 366 DKPDYTQLINLVKEVRDSLH 385
>09_04_0247 + 16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 256 VLRALPSTRRKLNGNVLRAIINQIYPASAEKETILSFVENPLPGAVEIEAPR 411
VL P +R K + + + + ++ P A +ET+ SF+ + L A++IE R
Sbjct: 1108 VLSHYPVSRDKKSNELKQTVATKL-PDIALRETLTSFIRDELENALKIEVGR 1158
>02_02_0315 +
8872199-8872815,8873141-8873243,8873346-8873405,
8873558-8873632,8873718-8873792,8873876-8873956,
8874466-8874657,8874762-8874947,8875047-8875094
Length = 478
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = +1
Query: 172 VLAVQDLREHIRQIDKAVTSK-EPRFAMRVLRALPSTRRKLNGNVLRAIINQIYPASAEK 348
++ +D + ++QID K P+ + ++ + G + I + PA+AE
Sbjct: 306 LIYAEDRKRTLKQIDDFFNKKVAPKELVDEIKEIGQALLPSTGTKSQPAITEAAPATAEA 365
Query: 349 ETILSFVENPLPGAVEIEAPRSRSAPKQPVP 441
+ P A +E + +AP +P P
Sbjct: 366 APAAA-TATAAPPAAPVEETSTEAAPAEPTP 395
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 586 CYFYHSRVFELTNKLDVIRGLLHARLRTSTLRNDYEGXAVIINC 717
CYF H+ +F L +DV +G+LH L +D ++ C
Sbjct: 185 CYF-HTGLFVLQPSMDVFKGMLH-DLEIGRANSDGADQGFLVGC 226
>01_06_0966 - 33453963-33456692
Length = 909
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 655 HVRDL*SHPTC*LVQTLLSDKNSILQQSSQGFFDF 551
++ +L P C L++TL+ N L + GFF F
Sbjct: 517 NILELYERPNCPLLKTLMLQVNPALDKICDGFFQF 551
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,608,459
Number of Sequences: 37544
Number of extensions: 317305
Number of successful extensions: 793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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