Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i10
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0)                       35   0.077
SB_53718| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0)
          Length = 609

 Score = 34.7 bits (76), Expect = 0.077
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
 Frame = +1

Query: 172 VLAVQDLREHIRQIDKAVTSKEPRFAMRVLRALPSTRRKLNGNVLRAIINQIYPASAEKE 351
           VL+  D + HIRQ  KA  +  P  A +  R  P   RK+   + R +I Q Y   A+K 
Sbjct: 125 VLSDSDSKRHIRQDSKASLNNGPEKAAKTSRKPPPPPRKIFDYLDRYVIGQDY---AKKV 181

Query: 352 TILSFVENPLPGAVEIEAPRSRSAPKQ--PVPEVDTY 456
             ++   +    +V I++    S P +  P+P    Y
Sbjct: 182 LAVAVYNHYKRLSVNIKSSSQNSVPAEVKPIPLTRPY 218


>SB_53718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +1

Query: 88  VEDVE----MKNVESPAAVSDVETADVKKDADVLAVQDLRE 198
           VEDV+    +K+V++   V DV  ADV KD D  A  D+ E
Sbjct: 114 VEDVDAGDVVKDVDAADDVEDVNAADVVKDVD--AADDVEE 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,029,007
Number of Sequences: 59808
Number of extensions: 386845
Number of successful extensions: 986
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)