Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11i10
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3, p... 99 1e-21
At1g20200.1 68414.m02524 26S proteasome regulatory subunit S3, p... 93 2e-19
At1g21560.1 68414.m02696 expressed protein 30 1.4
At2g29970.1 68415.m03645 heat shock protein-related contains sim... 30 1.8
At5g28480.1 68418.m03462 hypothetical protein 29 3.1
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc... 29 3.1
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 29 3.1
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 29 3.1
At1g19485.1 68414.m02427 AT hook motif-containing protein contai... 29 3.1
>At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3,
putative (RPN3) similar to 26S proteasome regulatory
subunit S3 SP:P93768 [Nicotiana tabacum (Common
tobacco)]
Length = 487
Score = 99 bits (238), Expect = 1e-21
Identities = 72/215 (33%), Positives = 109/215 (50%), Gaps = 3/215 (1%)
Frame = +1
Query: 91 EDVEMKNVESPAAVSDVETADVKKDADVLAVQDLREHIRQIDKAVTSKEPRFAMRVLRAL 270
+DVEMK+ ++P T V A +Q+L+E ID +KE R R +R
Sbjct: 3 QDVEMKDNQTP-------TQSVVS-APTSTLQNLKEIAALIDTGSYTKEVRRIARAVRLT 54
Query: 271 PSTRRKLNGNVLRAIIN-QIYPASAEKETILSFVENPLPGAVEIEAPRSRS-APKQPVP- 441
RRKL G+V+ + ++ + P S + SFV +E++ S S AP + +P
Sbjct: 55 VGLRRKLTGSVISSFLDFALVPGSEAHTRLSSFVPKSDEHDMEVDTASSNSQAPPKHLPA 114
Query: 442 EVDTYXXXXXXXXXXXXXXXEEATECSQQLMTKVTTQNRRTLDLIAAKCYFYHSRVFELT 621
E++ Y EA CS + ++ + NRRT+D+IA+K YFY+S +ELT
Sbjct: 115 ELEIYCYFIVLLFLIDQKKYNEAKVCSTASIARLKSVNRRTVDVIASKLYFYYSLSYELT 174
Query: 622 NKLDVIRGLLHARLRTSTLRNDYEGXAVIINCLLR 726
N L IR L A ++TLR+D G ++N LLR
Sbjct: 175 NDLAEIRSTLLALHHSATLRHDELGQETLLNLLLR 209
>At1g20200.1 68414.m02524 26S proteasome regulatory subunit S3,
putative (RPN3) similar to SP:Q06364 from [Daucus
carota]
Length = 488
Score = 92.7 bits (220), Expect = 2e-19
Identities = 67/216 (31%), Positives = 109/216 (50%), Gaps = 4/216 (1%)
Frame = +1
Query: 91 EDVEMKNVESPAAVSDVETADVKKDADVLAVQDLREHIRQIDKAVTSKEPRFAMRVLRAL 270
+DVEMK+ +P+ S + ++ +Q+L+E ID +KE R R +R
Sbjct: 3 QDVEMKDNNTPSQ-SIISSS-------TSTMQNLKEIAALIDTGSYTKEVRRIARAVRLT 54
Query: 271 PSTRRKLNGNVLRAIIN-QIYPASAEKETILSFVENPLPGAVEIEAPRS--RSAPKQPVP 441
R+KL G+VL + ++ + P S + SFV +E++ S ++AP + +P
Sbjct: 55 IGLRQKLTGSVLSSFLDFALVPGSEAHSRLSSFVPKGDEHDMEVDTASSATQAAPSKHLP 114
Query: 442 -EVDTYXXXXXXXXXXXXXXXEEATECSQQLMTKVTTQNRRTLDLIAAKCYFYHSRVFEL 618
E++ Y EA CS + ++ NRRT+D+IA++ YFY+S +E
Sbjct: 115 AELEIYCYFIVLLFLIDQKKYNEAKACSSASIARLKNVNRRTIDVIASRLYFYYSLSYEQ 174
Query: 619 TNKLDVIRGLLHARLRTSTLRNDYEGXAVIINCLLR 726
T L IRG L A ++TLR+D G ++N LLR
Sbjct: 175 TGDLAEIRGTLLALHHSATLRHDELGQETLLNLLLR 210
>At1g21560.1 68414.m02696 expressed protein
Length = 399
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 175 VHQHLSLHPLSQRH*QLQDFPHFSFQHLPLEPLYI 71
+H+ S+H +S RH +L+D FSF +P Y+
Sbjct: 309 LHKEASVHGVSSRHIELRDGTEFSFPTNKKKPSYL 343
>At2g29970.1 68415.m03645 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 1002
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 354 GFFLSTSGINLIDNSSQNVTV*LPASARQCSKYTHSESRFFRSNSFID 211
GFF STS + +SS N T LP KY + F +S S ID
Sbjct: 397 GFFSSTSDFRIPSSSSMNQT--LPRCHLCNEKYEQEVTAFAKSGSMID 442
>At5g28480.1 68418.m03462 hypothetical protein
Length = 1230
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MAPVEDVEMKNVESPAAVSDVETADVKKDADVLAVQD 189
+APV + E K+V SD D KKD DV V++
Sbjct: 936 VAPVNEKEKKSVRRRVTFSDDTKNDDKKDPDVTFVEE 972
>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
2b protein [Arabidopsis thaliana] GI:509423; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain; identical to cDNA
cyc2a mRNA for cyclin 2a protein GI:728518
Length = 429
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 85 PVEDVEMKNVESPAAVSDVETADVKKD-ADVLAVQDLREHIRQIDK 219
P+E+VEM++V + D++ D K A V VQDL R +++
Sbjct: 139 PMEEVEMEDVTVEEPIVDIDVLDSKNSLAAVEYVQDLYAFYRTMER 184
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MAPVEDVEMKNVESPAAVSDVETADVKKDADVLAVQD 189
+APV + E K+V SD D KKD DV V++
Sbjct: 906 VAPVNEKEKKSVRRRVTFSDDTKNDDKKDPDVTFVEE 942
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 79 MAPVEDVEMKNVESPAAVSDVETADVKKDADVLAVQD 189
+APV + E K+V SD D KKD DV V++
Sbjct: 892 VAPVNEKEKKSVRRRVTFSDDTKNDDKKDPDVTFVEE 928
>At1g19485.1 68414.m02427 AT hook motif-containing protein contains
Pfam profile: PF00730 HhH-GPD superfamily base excision
DNA repair protein; contains Pfam PF02178: AT hook
motif; contains Pfam PF00400: WD domain, G-beta repeat
(5 copies); contains Prosite PS00354: HMG-I and HMG-Y
DNA-binding domain (A+T-hook)
Length = 815
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +1
Query: 85 PVEDVEMKNVESPAAVSDVETADVKKDADVLAVQDLREHIRQIDKAVTSKEPRFAMRVLR 264
PVE E K V+ D DVL V+ L +R + +V P +R+LR
Sbjct: 219 PVETTEPKKPRGRPRKKSTAELPVELDDDVLYVEALS--VRYPENSVVPATP---LRILR 273
Query: 265 ALPSTRRKLN 294
P T K+N
Sbjct: 274 ETPVTETKVN 283
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,944,262
Number of Sequences: 28952
Number of extensions: 270929
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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