Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11i09
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 29 0.55
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 29 0.72
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.72
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 28 1.3
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 27 1.7
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 27 1.7
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 26 3.8
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 3.8
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 26 3.8
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 26 5.1
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 6.7
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 6.7
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 8.9
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 25 8.9
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 8.9
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 8.9
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 8.9
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 29.1 bits (62), Expect = 0.55
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 399 QLEKVETDQNYANVETEQKETPALPRNEV 485
+LE + D + N ET+ + +P LP+N++
Sbjct: 314 RLEAGKLDSEFFNYETDSRASPQLPKNDI 342
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 28.7 bits (61), Expect = 0.72
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +3
Query: 306 KKYFKRGELLAKEQEEYLRKYGPKVQEPEEKQLEKVETDQNYANVETEQKETPALPRNE 482
KK F+RG+ + +++YL++ K Q+ E+++L+K + ++ E ++ L E
Sbjct: 24 KKAFRRGDWEKEREKKYLQE---KQQKDEQRELKKRKLEEERLKYEEKKLRISRLANKE 79
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 468 LPRNEVIKRLRERGHPILLFAETEIQSFKR 557
L E+I +LRE PI LF E+E + +R
Sbjct: 124 LTLTEIIAKLREMKEPIRLFGESEEATIQR 153
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 28.7 bits (61), Expect = 0.72
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 267 YLIPLLHQDPSNKKKYFKRGEL---LAKEQEEYLRKYGPK 377
YLIP+ + KKYF GE+ +K QE+ + YG K
Sbjct: 546 YLIPISDEGDETLKKYFSEGEIQKVRSKGQEDGVLFYGWK 585
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 216 CEYLMNSLQIHIKVKKEYLIPLLHQDPSNKKKYFKRGELLAKEQEEYLRKYGP 374
C + NS ++ + +KK+ L LL + YF+R + E EEY K P
Sbjct: 380 CASIFNSSKMELLLKKQLLPSLLQLETY----YFRRSIETSLELEEYYTKVSP 428
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 336 AKEQEEYLRKYGPKVQEPEEKQLEKVETDQNYANVETEQKETPALPRNEVIK--RLRERG 509
+KE+E+ R+ ++ EE+ +E + D N ++ + + PR + R E
Sbjct: 491 SKEEEKREREKSKGIRGQEEEFIENADEDNNDSSSSSGSVVSAVKPRRSAVSNDRFSEDS 550
Query: 510 HP 515
HP
Sbjct: 551 HP 552
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 339 KEQEEYLRKYGPKVQEPEEKQLEKVETDQNYANVETEQKETPALPR 476
KE+EEY V+E +EK L+ + + V EQ ETP R
Sbjct: 172 KEEEEY-------VEEVDEKSLKNESSSDEFEPVVPEQLETPISKR 210
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +3
Query: 390 EEKQLEKVETDQNYANVETEQKETPALPRNEVIKRLRERGHPI--LLFAETEIQSFKRLR 563
E+K ++ + NYA VE E ++P E+I+ + E I LF F +
Sbjct: 422 EKKYMKHFISWLNYAIVEFNTSEPSSIPPQEIIEHINETVIYIRHSLFRSKLTSYFMGTK 481
Query: 564 RIEIQEPE 587
+++++P+
Sbjct: 482 PLQLRDPD 489
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 294 PSNKKKYFKRGELLAKEQEEYLRKYGPKVQEP----EEKQLEKVETDQN-YANVETEQKE 458
PS ++++ LL +E++E + Y P Q+P EE EK + ++ + E +
Sbjct: 547 PSERREFGLPERLLLEEEDEEPQGYSPNPQKPKPAMEENDAEKTKRLRSLIEKIPVEAES 606
Query: 459 TPALP 473
ALP
Sbjct: 607 LWALP 611
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 381 QEPEEKQLEKVETDQNYANVETEQKETPALPRNE 482
Q+ + +QLEK +TDQ A Q+ET + R E
Sbjct: 119 QKEQLQQLEKRQTDQVSARENILQRETSEIQRLE 152
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 519 LLFAETEIQSFKRLRRIEIQEPEVNRGFRND 611
+LF+ T+ +S K L R+ +Q P+ ND
Sbjct: 220 MLFSATQTKSVKDLARLSLQNPDFISVHEND 250
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 342 EQEEYLRKYGPKVQEPEEKQLEKVETDQNYANVETEQK 455
E+ E +R++ + E E + L KVE + ++ +QK
Sbjct: 257 EEREQIREFWLSLSESERRSLVKVEKEAVLQKMKEQQK 294
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 486 IKRLRERGHPILLFAETEIQSFKRLRRIEIQE 581
++ L RG+ I L+A TE+ K L I+ Q+
Sbjct: 941 LQLLGRRGYEITLYATTEVSRDKWLEHIDNQQ 972
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 312 YFKRGELLAKEQEEYLRKYGPKVQEPEEKQLEKVETDQNYANVET 446
Y + G ++ + + +R K EPE+K+ ET + +NV+T
Sbjct: 361 YARPGITTSRRRHDQIRPSSEK-SEPEKKEPSAFETLEKSSNVQT 404
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 516 ILLFAETEIQSFKRLRRIEIQEPEVNRGFRNDFQ 617
I F E I +++ ++ ++P + R FR+DFQ
Sbjct: 338 IYFFKELAISISSKMQMLDRRDPILLRVFRSDFQ 371
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/69 (20%), Positives = 32/69 (46%)
Frame = +3
Query: 318 KRGELLAKEQEEYLRKYGPKVQEPEEKQLEKVETDQNYANVETEQKETPALPRNEVIKRL 497
K+ EL+A + ++ ++ ++ N +T KE+ ++ NE++ ++
Sbjct: 352 KKQELIASVDSHLYVFFQAQLNALHKELIKSFFDASNEFPSDTPFKESSSIKINELVNKM 411
Query: 498 RERGHPILL 524
RE G + L
Sbjct: 412 REEGESLSL 420
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 381 QEPEEKQLEKVETDQNYANVETEQKETPALPRNE 482
+ P++ + K + + NVET+ +E PAL E
Sbjct: 232 EPPKQTRFLKSQQPTSEPNVETQVEEQPALENEE 265
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.0 bits (52), Expect = 8.9
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = +3
Query: 336 AKEQEEYLRKYGPKVQEPEEKQLEKVET 419
+KE+E+ + + +++E +KQ+E V +
Sbjct: 476 SKEEEDLITETAQEIEEQRQKQMESVRS 503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,232
Number of Sequences: 5004
Number of extensions: 40227
Number of successful extensions: 160
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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