Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i08
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    32   0.070
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   2.6  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    27   2.6  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   3.5  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   3.5  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 32.3 bits (70), Expect = 0.070
 Identities = 27/114 (23%), Positives = 42/114 (36%)
 Frame = +1

Query: 49   YLHSIFNSRISFISV*DPKAVVYNIKLFVMKEQ*KCFLLIGNFLDTFVINLYCYETKVNT 228
            YL S+  S     ++ D  A +Y           + FL   NF DT  +  YC +     
Sbjct: 858  YLESLLQSGSQDRAIYDALAKIY----IDSNNNPEVFLKENNFYDTLTVGKYCEKRDPYL 913

Query: 229  XXXXXXXXXXXXGVVNASIIRSVFFTLRHSLVRRTDHN*KGNTIFEKGYRHLLL 390
                         ++N     S+F  L   L++R+D N     + +  YR  LL
Sbjct: 914  AFIAYEKGGNDTEIINLCNENSMFKQLARYLLKRSDSNLWSEVLQDSAYRRPLL 967


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 443 IRIKNDEFRQYLGSNPE--DVYKEYTKDSYGWSVVNPFIKKSQKTVS 577
           +R+KNDE +  L ++PE  DV K Y        V N ++ +  +T S
Sbjct: 59  VRVKNDEIQLLLQNSPENADVPKIYNLRVMNKFVRNSYVFRESETSS 105


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 543 IRSLRNHRKLFPSTCLSQHAWPLTLKKDIVLTCWCKGWIY 662
           I S RN  +  P  C+   + PL+LK  I ++   K W Y
Sbjct: 469 IASARNAARREPINCILLDSNPLSLKGVITMSKHVKSWSY 508


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 410 NFLLYQYNSRCR*PFSKMVFPFQLWSVRLTNECRKVKKTLLII 282
           N LLY++      P     +   LW+++L+  CRK+K + +++
Sbjct: 38  NLLLYRFFRSPNTPLHTN-YQHVLWALKLSRYCRKLKTSPIVV 79


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
 Frame = +2

Query: 431 VKFQIRIKNDEFRQ-------YLGSNPEDVYKEYTK--DSYGWSVVNPFIKKSQKTVSIN 583
           +K  I    DEFR+       YL  N  D+  E  +   +    VV+ FI+ S +   I 
Sbjct: 278 MKRNIDCSEDEFREQVAWIIDYLLKNRRDIDAELYEPFQTAVRYVVHFFIRDSLEVPFIW 337

Query: 584 LFEPTCMAINTKERHSIDLLVQRVDLWRVILM 679
                 +  N +ER++I  L+ + DLW +  +
Sbjct: 338 QHRRDYIVHNNRERNTITPLLSQNDLWNIFFL 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,829
Number of Sequences: 5004
Number of extensions: 57990
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)