Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i08
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084)           29   2.8  
SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)             28   8.6  

>SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084)
          Length = 682

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 604 HACWLKQVDGNSFL*FLNERINNRPTVAIFCILFINIFW 488
           H CW K +        L+ ++NN    ++FC   +N FW
Sbjct: 342 HYCWNKNMSR-----LLSSQVNNHQHTSVFCYRCLNSFW 375


>SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)
          Length = 1480

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 604 HACWLKQVDGNSFL*FLNERINNRPTVAIFCILFINIFW 488
           H CW+K +        L+ +INN      FC   +N FW
Sbjct: 410 HYCWIKDMSR-----LLSSQINNHQHATEFCPRCLNPFW 443


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,636,019
Number of Sequences: 59808
Number of extensions: 397279
Number of successful extensions: 864
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)