Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11i06
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 28 1.6
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 28 1.6
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 27 2.1
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 27 3.6
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 27 3.6
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 26 4.8
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 6.3
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc... 26 6.3
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 6.3
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 6.3
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 8.4
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 8.4
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 81 CQKIRKLMRTQMKYKKTELQSIATKIRLMKENHKIMRFIL 200
C + + +Q KY TE+ I T + +EN +I+ +L
Sbjct: 430 CTNLINEVASQNKYSSTEISQITTNREVEEENEEILLVLL 469
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 98 INENSNEVQENRITEHSNEDTANERKSQNNEIHIDMTR 211
IN +E QEN + E E T++ + S+N++ ++T+
Sbjct: 685 INSKISEKQENNVAETILEVTSSPKSSENSQKQSEITK 722
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/60 (21%), Positives = 29/60 (48%)
Frame = +2
Query: 86 KDKEINENSNEVQENRITEHSNEDTANERKSQNNEIHIDMTRLGDDVKGTENERKNPSIV 265
KD + + + N H++ED AN + + +++ L ++V+G +NP ++
Sbjct: 57 KDTNMTDYVANLWTNLHGGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLI 116
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +2
Query: 65 KKIRTMPKDKEIN--ENSNEVQENRITEH--SNEDTANERKSQNNEIHIDMTRLGD-DVK 229
K + M + KE+ E + + R EH SN D+ + S NN++H + R +
Sbjct: 479 KNLSEMAEAKEVEREETRPKGESARYLEHADSNSDSEDLSSSANNDVHEPVARQDPFNEN 538
Query: 230 GTENERKNPS 259
E R PS
Sbjct: 539 EVEKSRTRPS 548
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 113 NEVQENRITEHSNEDTANERKSQNNE 190
NEV E T+HSN A+ +N E
Sbjct: 153 NEVLEGETTQHSNNKEAHPNTEENKE 178
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 412 VNVHSIIHRSGV-YHARYESVFSKDRLSNWHTSH-DFNYWAEFRDV 543
VN H V YH +SV+ + + W+ SH ++ W DV
Sbjct: 87 VNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDV 132
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 410 MLMCTASFTVLVFITPDMKVFFQRIGL 490
+L+ T FTVL+F P + VF+ L
Sbjct: 485 LLLGTILFTVLIFFLPTIYVFYAAFAL 511
>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1
Query: 271 PVLWSSKSERLGDVRR 318
P++WS+++ R GDVRR
Sbjct: 116 PLIWSNRNLREGDVRR 131
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 346 RRCAIIKSVAS*HPPVVLILSSIELVHHNTRIFSFI 239
R AI+K + + HP +V L ++ HH + ++
Sbjct: 545 REVAILKGLGNNHPHIVKYLDFVKTKHHFGIVLDYV 580
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 98 INENSNEVQENRITEHSNEDTANERKSQNNE 190
+N N + E+ + E+ E ANE + ++ E
Sbjct: 88 VNNNDKKEDEDNVEENEEEADANEEEEEDEE 118
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +2
Query: 122 QENRITEHSNEDTANERKSQNNEIH----IDMTRLGDDVKGTENERKNP 256
+++ + E ++E T+N R +++IH +++ DD T N+R +P
Sbjct: 1124 EKDAMLEKTDETTSNRRLRAHHKIHYGEDLNIYDNSDDTDYTVNDRSSP 1172
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 86 KDKEINENSNEVQENRITEHSNEDTANERKSQNNEIHIDMTRLGDDVKGTENERK 250
+ K I + + +++ RI S + ER+SQ+N + D DD + T N+RK
Sbjct: 227 EQKRILQLAYAIRKGRILT-SEQRAERERESQSN--YADHDLWADDDQATVNQRK 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,084
Number of Sequences: 5004
Number of extensions: 71262
Number of successful extensions: 258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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