Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i05
         (681 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9FKE5 Cluster: Disease resistance protein RPS4; n=2; A...    36   1.2  
UniRef50_A6W1T4 Cluster: Diguanylate cyclase; n=1; Marinomonas s...    33   6.4  

>UniRef50_Q9FKE5 Cluster: Disease resistance protein RPS4; n=2;
            Arabidopsis thaliana|Rep: Disease resistance protein RPS4
            - Arabidopsis thaliana (Mouse-ear cress)
          Length = 1232

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 429  SRRRRCSDNK*NTTPCTLIKCLFN*H*VHTRIQHSLYYYNYEELKVTST 575
            S R + +D     T CT++KC F+    HT + HSL   NY ++  T++
Sbjct: 1086 SLRFQVTDGTREVTNCTVVKCGFSLIYSHTNVDHSLCTDNYSDVTTTTS 1134


>UniRef50_A6W1T4 Cluster: Diguanylate cyclase; n=1; Marinomonas sp.
           MWYL1|Rep: Diguanylate cyclase - Marinomonas sp. MWYL1
          Length = 368

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 188 SSYIITILPTFYFTPSHLISFNFTPIDKNLKLFNFIAMRF 307
           S +   ++ T +FT SH   F + P+ K   LF+F+ + F
Sbjct: 148 SFFTFALIITMFFTDSHFAEFGYDPVLKTRILFSFVVVVF 187


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,285,904
Number of Sequences: 1657284
Number of extensions: 12647798
Number of successful extensions: 28306
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28277
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)