Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i05
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    29   0.47 
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    29   0.47 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   1.4  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   5.8  

>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 513 HTRIQHSLYYYNYEELKVTSTDRYSVYKQYTEDTLHDST 629
           H  ++   + YNY+++   + D Y V+ +   ++ HD+T
Sbjct: 421 HMTLEEFTHAYNYQQIHEPALDEYFVHDRAVRESGHDTT 459


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 169 PKS--SLVVFVHNHHFTNILFHPVASHFF 249
           PKS  SL VF HN   T + FHP+   +F
Sbjct: 283 PKSTKSLAVFRHNEIVTCVAFHPIDDRYF 311


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -2

Query: 452 IRTPTAPTQV--LTYLYHITLRVRTTHTYSNHIYTTILVYNPI-PLSYKKN 309
           ++T T  +QV  LTY+  +T  + TT TY +H + T +  +P   +SY  N
Sbjct: 403 VQTTTHGSQVETLTYVTTLTETILTT-TYDSHTFLTTITPSPSNSISYTNN 452


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 172 KSSLVVFVHNHHFTNILFHPVASHFF 249
           K  L  F H+   T+I FHP    FF
Sbjct: 340 KDCLCCFEHSDFVTSIAFHPKDDRFF 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,047
Number of Sequences: 5004
Number of extensions: 59369
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)