Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i05
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274...    32   0.48 
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462...    31   0.64 
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398...    28   7.9  

>05_06_0223 -
           26525618-26526112,26526203-26526370,26526649-26527473,
           26527898-26528004,26529701-26529767
          Length = 553

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 651 LSLCLSLLYCRVKCLLCTVYKLNIYLCS*PSILHNYNNIDCVVFSCGL 508
           LS C  L+Y ++ CLL  +  LN+ LC    I     N+  +++S  L
Sbjct: 237 LSYCRELVYLKIPCLLEQLSYLNVDLCHLQMIESKAPNLSSLIYSGNL 284


>05_04_0389 -
           20845490-20845600,20845697-20846006,20846097-20846242,
           20846319-20846426,20846508-20846615,20846997-20847109,
           20847340-20847437,20847530-20847714,20847811-20847953,
           20848293-20848377,20848486-20848624,20848686-20848780,
           20848894-20849037,20849114-20849206,20849310-20849376,
           20849529-20849641,20849750-20849845,20853885-20854058
          Length = 775

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 471 VSYFIYYPNTD-GAYSGTYIPLSYYTTRPDDAY 376
           VSY++Y+  T+ G ++ +Y+  SYY   P D Y
Sbjct: 303 VSYYMYHGGTNFGRFAASYVTTSYYDGAPLDEY 335


>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
            3983250-3983301,3983497-3983654,3983756-3985617,
            3986029-3986093,3986176-3986340,3986836-3986893,
            3987479-3987590,3987661-3987712,3988080-3988140,
            3988220-3988377,3988705-3988787,3988897-3988945,
            3989122-3989185,3990225-3990317,3990410-3990543,
            3991364-3991585,3991815-3991937,3992103-3992267,
            3993064-3993450
          Length = 1479

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 172  KSSLVVFVHNHHFTNILFHPVASHFF 249
            K+ L VF HN + T I F+P    FF
Sbjct: 1273 KACLKVFAHNDYVTCIQFNPADDRFF 1298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,295,704
Number of Sequences: 37544
Number of extensions: 317028
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)