Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i02
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52732| Best HMM Match : M (HMM E-Value=0.019)                       31   0.72 
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)                    29   3.9  
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)            28   5.1  
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)        28   5.1  
SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44)                    28   6.7  
SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053)               28   6.7  
SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)                  27   8.9  
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
          Length = 1366

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
 Frame = +1

Query: 313  LKALHTKGERELVEF--LTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDET 486
            L+A++ + E +L++   + EE+ +E +  + K L  E +  T+K D A+V    Q + E 
Sbjct: 1114 LQAVNNELEEKLMDLSRVGEELKSENEGLQQKCLDLEKQRDTIKQDLADV----QKEHEN 1169

Query: 487  IRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRS 582
            ++   +++   +   F+  +Q+EK+EF +  S
Sbjct: 1170 LKSAVSISEG-ELLKFKNTLQSEKEEFEKKLS 1200


>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/88 (26%), Positives = 45/88 (51%)
 Frame = +1

Query: 337 ERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNHT 516
           E+E  E   ++   ++KA KV+   A  +G   +G G++    +  KD+T +     + +
Sbjct: 71  EKETFEPEQKKKKKDKKAGKVRDDRAR-KGSDSEG-GSDERKCEDRKDKTRKKKRKHDSS 128

Query: 517 VDSDDFEGDVQTEKQEFSEMRSKPQFEV 600
            DSDD   DV  +K++  E R + + ++
Sbjct: 129 EDSDDNSSDVSAKKKQCKEERKRKRHKL 156


>SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)
          Length = 674

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -3

Query: 394 SVLCVQQLFLLSGTLP---VLFHLSCEAPSTRSRSCKYWNGCVASWWKPG 254
           +VL   + F  +G +P   V +HL+  +P   S +C+  + C AS + PG
Sbjct: 623 AVLAYDREFREAGGIPRVQVSYHLTTLSPLDTSTACQVLSACAASSFIPG 672


>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
          Length = 445

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +1

Query: 316 KALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVL-TKQLKDETIR 492
           +A+H + E   VEF    +  E    +++++P + E   V+ +   V L    ++ E + 
Sbjct: 309 EAMHVEFEAMHVEFEAMHVQLEAMPVQLEAMPVQFEAMPVQFEAMHVQLEAMHVQLEAMP 368

Query: 493 VTFNVNHTVDSDDFEG-DVQTE 555
           V F   H      FE   VQ E
Sbjct: 369 VQFEAMHEATPVQFEAMPVQLE 390


>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
          Length = 1136

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 245 NLREQLMCHIPLVKSRFTAVCVRLTNPLK 159
           N++EQ++  +P+  +RF +VC  L N LK
Sbjct: 841 NMKEQMLSMVPV--ARFESVCEELNNALK 867


>SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -2

Query: 317 FNPQPQLQVLEWLCSKLVEARVPSNLREQLMCHIPLVKSRFTAVCVRLT--NPLKFAVLT 144
           FNP  + Q+ + +  + V+ +  + L E +  H P   +RF  V +RLT    ++  ++ 
Sbjct: 277 FNPDTE-QLADAVQIQAVQNKTQNALEEYIRVHYPQTPNRFGQVLLRLTALGAVECKIIE 335

Query: 143 HV 138
           HV
Sbjct: 336 HV 337


>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1203

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 323 SAFNPQPQLQVLEWLCSKL 267
           SAFNP+P   ++EW+  +L
Sbjct: 146 SAFNPKPSPSIIEWIAKEL 164


>SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44)
          Length = 267

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -1

Query: 456 NFSTVSLYSKAFDFSRERLDLLCFAFSNYFFCQELYQF 343
           +FST+ ++S    +S   ++   F F +  +C++L++F
Sbjct: 101 HFSTLLVFSNILMYSNSAINPFIFVFLHSRYCKDLFRF 138


>SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053)
          Length = 870

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
 Frame = +1

Query: 295  CSCGCGLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEV-VLTKQ 471
            CS GC +  L T GE +   F  E+    +   +++S P +  G +++    ++ +L  +
Sbjct: 770  CSLGCCVTMLLTAGEVQEEAFGLEDNKGFKMKSQIQSGP-DFGGLSMEEAVGDLGILEVE 828

Query: 472  LKDETIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSK 585
            L++  +  T    + +D +D + ++  E+Q+    R K
Sbjct: 829  LEEPVVEQT----NPIDGEDEDEEILEEQQDEDAKRVK 862


>SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)
          Length = 970

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 467 FVKTTSAPSPFTVKPSTSAGRDLTFCALR-SATISSVRNSTSSLSPFV*SAFNP 309
           F   TS P+PFTV        D+T C L  S    +V  S   L+P++  A  P
Sbjct: 314 FCYGTSLPNPFTVYHDDVGIIDVTTCCLSGSPPGEAVNTSCELLTPWLDKALIP 367


>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1208

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +1

Query: 421  EGFTVKGDGAEVVLTKQLKDETIRVTFNVNHTVD--SDDFEGDVQTEKQEFSEMRSKP-Q 591
            E F  KGD  + VLT   K+E ++      H  D  S DF       + + +    KP Q
Sbjct: 902  ENFPTKGDLRKHVLTCDKKEEKVKSKEVTLHVCDQCSKDFASPYNLRRHQLTHTDEKPFQ 961

Query: 592  FEV 600
             EV
Sbjct: 962  CEV 964


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 316  KALHTKGERELVEFLTEEIVAERKAQ-KVKSLPAEVEGFTVKGDGAEVVLTKQLKDETIR 492
            K +  +   +L   L E    E+  Q KVK+L  E     +KG    + +TK  + ET+ 
Sbjct: 1556 KGVAKRNAEKLRTALNERKDREKAFQEKVKALKQEC--LHLKGINDRIAVTKSGRRETVE 1613

Query: 493  VTFNVNHTVDSDD 531
            +    N+ V+S D
Sbjct: 1614 IHLKGNNEVESKD 1626


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,165,894
Number of Sequences: 59808
Number of extensions: 346387
Number of successful extensions: 1441
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)