Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11i02
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical pr...    43   1e-04
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    33   0.21 
AL032651-2|CAB60579.1|  272|Caenorhabditis elegans Hypothetical ...    31   0.48 
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    31   0.48 
U41263-11|AAO38595.1|  516|Caenorhabditis elegans Hypothetical p...    30   1.1  
U41263-10|AAO38593.1|  610|Caenorhabditis elegans Hypothetical p...    30   1.1  
AL590342-5|CAC35862.1|  507|Caenorhabditis elegans Hypothetical ...    30   1.1  
AL032627-24|CAA21552.1|  507|Caenorhabditis elegans Hypothetical...    30   1.1  
AL032622-8|CAA21503.1|  507|Caenorhabditis elegans Y66A7A.8 prot...    30   1.1  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    29   3.4  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    27   7.9  
U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 rela...    27   7.9  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    27   7.9  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      27   7.9  
AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell fac...    27   7.9  

>Z34801-4|CAA84328.1|  236|Caenorhabditis elegans Hypothetical
           protein F59A2.3 protein.
          Length = 236

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +1

Query: 343 ELVEFLTEEIVAERKAQKVK---SLPAEVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNH 513
           EL + L  EI AE++        ++     GF V    AEV LTK+   E I V FNVNH
Sbjct: 41  ELQQALNREIEAEQQLSSDNLQGAVAPTFAGFQVTNKDAEVRLTKKNGSEDILVVFNVNH 100

Query: 514 TVDSDD 531
           +VD D+
Sbjct: 101 SVDMDE 106


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -1

Query: 387 FAFSNYFFCQELYQFSFTFRVKRLQPAAAAASIGMVV*QAGGSQGPI*P--SRAAHVPYT 214
           F   +Y + Q+L    +  + ++ Q AAAAA+        G  QGP  P  S++  +P  
Sbjct: 336 FQSDHYRYSQQLQHVQWQQQQQQQQAAAAAAAAAAAASAGGHHQGPPPPTSSQSNQIPSN 395

Query: 213 PSKVAFH 193
           P+ V  H
Sbjct: 396 PNSVPVH 402


>AL032651-2|CAB60579.1|  272|Caenorhabditis elegans Hypothetical
           protein Y6D1A.2 protein.
          Length = 272

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +1

Query: 361 TEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETIR-VTFNVNHTVDSDDFE 537
           T+EI   + A K++     +E   V+    E  +  Q   E++R ++ NV H VD+D F+
Sbjct: 32  TKEIERLKAAHKMQVDALNIELTAVQNVLKEKSIINQSLTESLRNISANVRHRVDADSFK 91

Query: 538 GDVQTEKQEFSEMR 579
            +++ E  E   +R
Sbjct: 92  IELKREAMEKFHIR 105


>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
            protein K09F6.3 protein.
          Length = 1360

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +1

Query: 310  GLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAEVEGFTVKGDGAEVVLTKQLKDETI 489
            G K    K  REL     + I AE+K +++K L A+V+    KG+  +    K+++D   
Sbjct: 823  GTKIEKEKIARELAAQEAQNIEAEKKKKEIKDLEAKVDYEKQKGEKIKEEAEKEIQDHRK 882

Query: 490  RV 495
            +V
Sbjct: 883  KV 884


>U41263-11|AAO38595.1|  516|Caenorhabditis elegans Hypothetical
           protein T19D12.2c protein.
          Length = 516

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -2

Query: 479 SLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPF 330
           S +CF   +S PSP T  P T       F     +T +S+  STSS SPF
Sbjct: 384 SFTCFDDGSSTPSPTTRCPGTQGTTQPGF-----STTTSLSPSTSSSSPF 428


>U41263-10|AAO38593.1|  610|Caenorhabditis elegans Hypothetical
           protein T19D12.2a protein.
          Length = 610

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -2

Query: 479 SLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSLSPF 330
           S +CF   +S PSP T  P T       F     +T +S+  STSS SPF
Sbjct: 384 SFTCFDDGSSTPSPTTRCPGTQGTTQPGF-----STTTSLSPSTSSSSPF 428


>AL590342-5|CAC35862.1|  507|Caenorhabditis elegans Hypothetical
           protein Y66A7A.8 protein.
          Length = 507

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 494 TRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 342
           T   S+ S F  T+S P      P  S   D +FC+  SAT S     T++
Sbjct: 440 TSFDSAYSSFNVTSSTPEQMCYNPIPSMSTDYSFCSFDSATSSPPLQPTAT 490


>AL032627-24|CAA21552.1|  507|Caenorhabditis elegans Hypothetical
           protein Y66A7A.8 protein.
          Length = 507

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 494 TRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 342
           T   S+ S F  T+S P      P  S   D +FC+  SAT S     T++
Sbjct: 440 TSFDSAYSSFNVTSSTPEQMCYNPIPSMSTDYSFCSFDSATSSPPLQPTAT 490


>AL032622-8|CAA21503.1|  507|Caenorhabditis elegans Y66A7A.8
           protein.
          Length = 507

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 494 TRIVSSLSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSS 342
           T   S+ S F  T+S P      P  S   D +FC+  SAT S     T++
Sbjct: 440 TSFDSAYSSFNVTSSTPEQMCYNPIPSMSTDYSFCSFDSATSSPPLQPTAT 490


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 458 TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 348
           T S+PSP ++ PSTS    LT     S+T SS   ST
Sbjct: 473 TNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 509


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 458 TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 348
           T S+PSP ++ PSTS    LT     S+T SS   ST
Sbjct: 680 TNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 458 TTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNST 348
           T S+PSP ++ PSTS    LT     S+T SS   ST
Sbjct: 680 TNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 197 FTAVCVRLTNPLKFAVLTHVCSTLWVALTMPLIF 96
           F  VC  LTN +K  V  H C+     L + L+F
Sbjct: 27  FAGVCFSLTNTVKHCVEQHACTNDGKYLVIALVF 60


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 482 SSLSCFVKTTSAPSPFTVKPSTSAGR-DLTFCALRSATISSVRNSTSS 342
           S  S    +T+APS  T  PS+S+     T  +  S+T SS ++STS+
Sbjct: 484 SPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTST 531


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 482 SSLSCFVKTTSAPSPFTVKPSTSAGR-DLTFCALRSATISSVRNSTSS 342
           S  S    +T+APS  T  PS+S+     T  +  S+T SS ++STS+
Sbjct: 484 SPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTST 531


>U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 related
           protein 1 protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 394 SVLCVQQLFLLSGTLPVLFHLSCEAPSTRSRSCKYWNGC 278
           SVL   ++F+  G +P+L H S E  + +   C    GC
Sbjct: 274 SVLIGDKMFVYGGWVPLLEHASTEQQTEKEWKCTSSLGC 312


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 549 LNITLKVIRVHSVINVECDTNCFIFKLLC*NNFSTVSLYSK 427
           LNI +K+I   S   ++      IF LLC NN +  SLY++
Sbjct: 437 LNIFVKIIHFISQQKLDFAFKEIIFDLLCVNNRTQRSLYAE 477


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 549 LNITLKVIRVHSVINVECDTNCFIFKLLC*NNFSTVSLYSK 427
           LNI +K+I   S   ++      IF LLC NN +  SLY++
Sbjct: 437 LNIFVKIIHFISQQKLDFAFKEIIFDLLCVNNRTQRSLYAE 477


>AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell factor
           1 protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 394 SVLCVQQLFLLSGTLPVLFHLSCEAPSTRSRSCKYWNGC 278
           SVL   ++F+  G +P+L H S E  + +   C    GC
Sbjct: 274 SVLIGDKMFVYGGWVPLLEHASTEQQTEKEWKCTSSLGC 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,746,921
Number of Sequences: 27780
Number of extensions: 258466
Number of successful extensions: 941
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)