Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h24
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   9.0  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   9.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   9.0  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 174 SCCILSHFTFFSTYYP 127
           +CC  SHF  FS +YP
Sbjct: 323 ACCFESHFFAFSQHYP 338


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 192  YVRKCTSCCILSHFTFFSTYY 130
            +++    CC+L HFT  S +Y
Sbjct: 1504 FIKILKDCCVLGHFTPESEHY 1524


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 411 QLNWFSFSKLIRKPRPWGHF 352
           Q +W++  + IRK  P+GH+
Sbjct: 554 QEDWYAKKERIRKSSPYGHY 573


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 301  KLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPI 405
            K+ QLE TI  + K+L+            T+T+P+
Sbjct: 1691 KITQLEETIENLNKQLSNPEKTDESTSSVTETKPV 1725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,656
Number of Sequences: 5004
Number of extensions: 45739
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)