Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h24
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0442 - 25229186-25229568,25229740-25232671                       29   2.3  
05_04_0260 + 19501643-19503010                                         29   3.0  
04_04_0850 - 28697462-28697684,28697894-28697971,28698103-286984...    28   5.3  
05_07_0246 + 28634530-28634735,28634841-28634901,28634996-286350...    28   7.0  
05_06_0138 + 25946545-25946632,25946715-25947489,25947627-259479...    28   7.0  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     27   9.2  
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506...    27   9.2  
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964...    27   9.2  

>04_04_0442 - 25229186-25229568,25229740-25232671
          Length = 1104

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 151 KMAQNTATGTFSNIITQIQNLPTMDLGR-RFRTP 249
           ++A N+ TG+F   +  + NL T++LGR +F  P
Sbjct: 465 RLADNSLTGSFPTDLCNLVNLTTIELGRNKFNGP 498


>05_04_0260 + 19501643-19503010
          Length = 455

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 109 LNQTTAGVVSRKKSKMAQNTATG--TFSNIITQIQNLPT 219
           L+  +AG ++   S+  +NTAT   T  NIIT + +LPT
Sbjct: 108 LDAVSAGCLNDTCSEFPKNTATSVSTAGNIITDVLSLPT 146


>04_04_0850 -
           28697462-28697684,28697894-28697971,28698103-28698495,
           28698590-28698893,28698978-28699188,28699943-28700674
          Length = 646

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 237 ISNPVQNWKQMWKGYQK 287
           +S P  NWK+ WKG+Q+
Sbjct: 334 LSGPPINWKKHWKGWQR 350


>05_07_0246 +
           28634530-28634735,28634841-28634901,28634996-28635088,
           28635326-28635391,28635506-28635576,28636225-28636329,
           28637065-28637134
          Length = 223

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 404 IGSVLVNLSGSRDPGGILVNSFMIPIIVFSNWAN 303
           +G V ++LSG+ DP    +++FM+ I V SN  N
Sbjct: 153 VGWVHISLSGA-DPRETFIHTFMLQISVLSNHLN 185


>05_06_0138 +
           25946545-25946632,25946715-25947489,25947627-25947910,
           25948100-25948238,25948323-25948394,25948477-25948548,
           25948726-25948806,25948894-25949054,25949162-25949424,
           25949661-25949787,25949974-25950042,25950154-25950346,
           25950446-25950860
          Length = 912

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 142 KKSKMAQNTATGTFSNIITQIQNLPTMDL 228
           K   ++ N  TG+  N+I+Q+Q L  +DL
Sbjct: 451 KNLDLSHNNLTGSIPNVISQLQFLAVLDL 479


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 103 NILNQTTAGVVSRKKSKMAQNTATGTFSNIITQIQN 210
           NI++  T GVV    S++A+   T T ++  TQ+ +
Sbjct: 217 NIISFATGGVVVANSSRLAREGTTATTTSAATQLSS 252


>02_05_0288 -
           27549718-27549940,27550025-27550102,27550282-27550674,
           27550752-27551347,27552232-27552978
          Length = 678

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 237 ISNPVQNWKQMWKGYQK 287
           +S P  NWK+ WKG+++
Sbjct: 371 LSGPPINWKKYWKGWER 387


>01_07_0383 - 43195095-43195322,43195408-43195638,43196134-43196454,
            43196512-43196589,43196664-43197727,43197813-43198503,
            43198743-43199541,43200010-43200158,43200159-43200286,
            43200389-43200494,43200835-43200843,43201332-43201821,
            43201896-43202554,43203759-43203851,43204044-43204196,
            43205092-43205194,43205376-43205467,43206229-43206306,
            43206987-43207049,43207339-43207512
          Length = 1902

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 181  FSNIITQIQNLPTMDLGRRFRTPCKTGNKCGKVIKRLMVPK 303
            +S +++ +Q LP   + R    P +TG  CGK     ++P+
Sbjct: 1624 WSLLLSHLQLLPPASITRERHIPLRTGAPCGKKKDAELMPE 1664


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,425,390
Number of Sequences: 37544
Number of extensions: 269553
Number of successful extensions: 658
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)