Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h24
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023858-1|CAA19568.2|  328|Caenorhabditis elegans Hypothetical ...    31   0.51 
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    31   0.67 
Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical p...    27   8.3  
Z48809-6|CAE17928.1|  174|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AF022978-4|AAG24178.1|  383|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AL023858-1|CAA19568.2|  328|Caenorhabditis elegans Hypothetical
           protein ZK285.1 protein.
          Length = 328

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = -3

Query: 356 ILVNSFMIPIIVFSNWANLGTISLLITFPHLFPVLHGVRNLLPRSMVGKF*ICVIMFENV 177
           ++ NS ++ +I+  +   LGT   L+ +  L+ +++   N+      G F     MF+++
Sbjct: 16  VITNSLLMFLILGKSPPQLGTYKWLMLYTSLYELVYTSMNIFVEPSTGTFQSSCYMFQDM 75

Query: 176 PVAVF*AI-LLFFRLTTPAVVWFSIFI 99
             ++F A   LFF L   +   FS+ I
Sbjct: 76  KKSMFGADGTLFFILIYCSCYGFSMSI 102


>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -2

Query: 573 TPQSSATISDQILPQRVVLLKEQLLQNALTTFIFFQAGLQLVHT 442
           TP+ + TI D IL +     K Q ++  +T +IF+Q  L +VHT
Sbjct: 364 TPEENNTIWDYILTKARGPGKTQRIKEKMTGWIFWQEFLDVVHT 407


>Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical
           protein Y69H2.11 protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 213 QILNLCDYVRKCTSCCILSHFTFFSTYYPCRC 118
           +++N CDY + C +    S     +T Y C C
Sbjct: 372 EVINRCDYGKPCNNGKCASTIDGITTNYTCTC 403


>Z48809-6|CAE17928.1|  174|Caenorhabditis elegans Hypothetical
           protein T01E8.9 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 310 QLENTI-MGIMKELTKMPPGSRLPDKFTKTEPIKLLLDQNYKEDVCMD 450
           +L+ T+  G ++ L + P GSRL   F+ ++P+  L D       C D
Sbjct: 63  KLKGTVSQGPLRLLVRYPNGSRLILSFSPSQPMTSLFDAIILNPACPD 110


>AF022978-4|AAG24178.1|  383|Caenorhabditis elegans Hypothetical
           protein T01G6.5 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 232 RRFRTPCKTGNKCGKVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLP 378
           ++ R  CK+GNKC          K  ++   +   MK  +K PP + +P
Sbjct: 36  KKKRKSCKSGNKCRDFNGNFPQCKSCRMRKCLRVGMKLESKSPPPAAIP 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,922,446
Number of Sequences: 27780
Number of extensions: 253537
Number of successful extensions: 700
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)