Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h23
         (448 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   0.75 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   0.75 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   5.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   5.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   5.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   5.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   5.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   5.3  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    21   5.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   5.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   5.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.0  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   7.0  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   7.0  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    20   9.3  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    20   9.3  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    20   9.3  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    20   9.3  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    20   9.3  

>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 272 KKIVTFTTNRRSNWKKSERN*N*TLKYPRKKTN 370
           ++I  +  NRR  WKK  +  N   K  R+KTN
Sbjct: 275 RQIKIWFQNRRMKWKKDNKLPN--TKNVRRKTN 305


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 272 KKIVTFTTNRRSNWKKSERN*N*TLKYPRKKTN 370
           ++I  +  NRR  WKK  +  N   K  R+KTN
Sbjct: 275 RQIKIWFQNRRMKWKKDNKLPN--TKNVRRKTN 305


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 242 AEASANTEQPKKIVTFTTNRRSNWKKSER 328
           A A   TE+  KI  +  NRR  WKK  +
Sbjct: 254 AHALCLTERQIKI--WFQNRRMKWKKEHK 280


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 242 AEASANTEQPKKIVTFTTNRRSNWKKSER 328
           A A   TE+  KI  +  NRR  WKK  +
Sbjct: 254 AHALCLTERQIKI--WFQNRRMKWKKEHK 280


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 242 AEASANTEQPKKIVTFTTNRRSNWKKSER 328
           A A   TE+  KI  +  NRR  WKK  +
Sbjct: 276 AHALCLTERQIKI--WFQNRRMKWKKENK 302


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 242 AEASANTEQPKKIVTFTTNRRSNWKKSER 328
           A A   TE+  KI  +  NRR  WKK  +
Sbjct: 254 AHALCLTERQIKI--WFQNRRMKWKKEHK 280


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 242 AEASANTEQPKKIVTFTTNRRSNWKKSER 328
           A A   TE+  KI  +  NRR  WKK  +
Sbjct: 210 AHALCLTERQIKI--WFQNRRMKWKKEHK 236


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 242 AEASANTEQPKKIVTFTTNRRSNWKKSER 328
           A A   TE+  KI  +  NRR  WKK  +
Sbjct: 254 AHALCLTERQIKI--WFQNRRMKWKKEHK 280


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 242 AEASANTEQPKKIVTFTTNRRSNWKKSER 328
           A A   TE+  KI  +  NRR  WKK  +
Sbjct: 42  AHALCLTERQIKI--WFQNRRMKWKKEHK 68


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 242 AEASANTEQPKKIVTFTTNRRSNWKKSER 328
           A A   TE+  KI  +  NRR  WKK  +
Sbjct: 278 AHALCLTERQIKI--WFQNRRMKWKKENK 304


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 242 AEASANTEQPKKIVTFTTNRRSNWKKSER 328
           A A   TE+  KI  +  NRR  WKK  +
Sbjct: 254 AHALCLTERQIKI--WFQNRRMKWKKEHK 280


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 228 RSTAASALSCSRSWYTRRSCKPSTQVHI 145
           R T  +A    R W T  + +P  Q+H+
Sbjct: 515 RETGEAACDPYRPWQTVYNHRPWQQLHL 542


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 272 KKIVTFTTNRRSNWKKSERN 331
           ++I  +  NRR  +KK E+N
Sbjct: 127 RQIKIWFQNRRMKFKKEEKN 146


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 272 KKIVTFTTNRRSNWKKSERN 331
           ++I  +  NRR  +KK E+N
Sbjct: 147 RQIKIWFQNRRMKFKKEEKN 166


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 34  KNPKNMNSIKISAICSRC 87
           K PK +    ISAI   C
Sbjct: 296 KKPKKITDFSISAIMKDC 313


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 225 STAASALSCSRSWYTRRSCK 166
           STA+SAL+ +    T +SC+
Sbjct: 33  STASSALAAAVDAATDKSCR 52


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 225 STAASALSCSRSWYTRRSCK 166
           STA+SAL+ +    T +SC+
Sbjct: 92  STASSALAAAVDAATDKSCR 111


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 225 STAASALSCSRSWYTRRSCK 166
           STA+SAL+ +    T +SC+
Sbjct: 33  STASSALAAAVDAATDKSCR 52


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 225 STAASALSCSRSWYTRRSCK 166
           STA+SAL+ +    T +SC+
Sbjct: 92  STASSALAAAVDAATDKSCR 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,247
Number of Sequences: 336
Number of extensions: 1397
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10090848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)