Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h23
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0558 + 4109929-4110042,4110989-4111097,4111404-4111563,411...    28   3.0  
02_02_0373 - 9534016-9534226,9534251-9534297,9534453-9534500,953...    27   5.2  
07_03_1181 + 24606407-24606480,24607060-24608752                       27   6.9  
11_04_0097 + 13448740-13450725                                         27   9.1  
04_04_0132 + 22998941-22999073,22999218-22999347,23000257-230009...    27   9.1  

>02_01_0558 +
           4109929-4110042,4110989-4111097,4111404-4111563,
           4111721-4111796,4111984-4112109,4112233-4112484
          Length = 278

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 209 AEAAVDLSGNPAEASANTEQPKKIVTFTTNRRSNWKKSER 328
           +E+ +D+ G P E S N    K++    +NR S  +  +R
Sbjct: 103 SESLLDIEGGPCEQSTNPLDVKRVRRMVSNRESARRSRKR 142


>02_02_0373 -
           9534016-9534226,9534251-9534297,9534453-9534500,
           9534772-9534972,9535090-9535215,9535386-9535461,
           9535617-9535776,9536074-9536182,9537225-9537398
          Length = 383

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 209 AEAAVDLSGNPAEASANTEQPKKIVTFTTNRRSNWKKSER 328
           +E+ +D+ G P E S N    K++    +NR S  +  +R
Sbjct: 123 SESLLDIEGGPCEQSTNPLDVKRMRRMVSNRESARRSRKR 162


>07_03_1181 + 24606407-24606480,24607060-24608752
          Length = 588

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 265 AAQEDSYFYDKQKEQLEKIRKKLKLNPEISQKEDK*AEKLR 387
           A  ED      +K + EK RKK K    + +KE+K  E+++
Sbjct: 64  AGAEDGNETKSEKRKKEKKRKKAKALEALEEKENKEREEMK 104


>11_04_0097 + 13448740-13450725
          Length = 661

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 182 VYQDLEQERAEAAVDLSGNP--AEASANTEQPKK 277
           +Y+D+E+E+AEAA   +     AEA A  E+ +K
Sbjct: 558 LYEDVEREKAEAAARAAEEKARAEALAKEEEERK 591


>04_04_0132 +
           22998941-22999073,22999218-22999347,23000257-23000950,
           23001545-23001580,23003165-23003446
          Length = 424

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 259 YGAAQEDSYFYDKQKEQLEKIRKKLKLNPEISQKE 363
           YG+     Y++  +K+  E++R KL+    ISQK+
Sbjct: 366 YGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQ 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,688,480
Number of Sequences: 37544
Number of extensions: 132286
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)