Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h23
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)             31   0.57 
SB_12669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_22425| Best HMM Match : PigN (HMM E-Value=0)                        27   5.3  
SB_29666| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_6057| Best HMM Match : ig (HMM E-Value=7.3e-06)                     27   7.1  
SB_54435| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)
          Length = 783

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 28  NEKNPKNMNSIKISAICSRCTNYLLPKQIAGISDLNNHLNVN 153
           ++ N KN+ +IK S +C+    Y  P ++    +LN  ++VN
Sbjct: 430 SKSNQKNLGTIKCSNLCTEIVEYSAPDEVV-TKNLNKIIDVN 470


>SB_12669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +1

Query: 295 KQKEQLEKIRKKLKLNPEISQKEDK*AEKLRQKHTK 402
           ++++Q EK RK+ K   E +QK+ +  +K RQK+ K
Sbjct: 270 RREKQKEKSRKQWKSRIEHTQKQKEDRQKQRQKNLK 305


>SB_22425| Best HMM Match : PigN (HMM E-Value=0)
          Length = 913

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -1

Query: 430 ESICIEICLFLCVFVSISQLICLLSGIFQGSVSISF*FFPVAPSVCRKSNY 278
           E +C+ +  F C++V +    C  + +F    ++    FP+ P V R++NY
Sbjct: 538 EVLCLGLGCF-CIWVLLLTRACWSARLFWILSALGLAIFPLLPVVGREANY 587


>SB_29666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 191 DLEQERAEAAVDLSGNPAEASANT-EQPKKIV 283
           DL+QER+  AV  S  P   S NT EQP  ++
Sbjct: 165 DLQQERSLIAVSGSATPKGLSINTVEQPHNLL 196


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 409  CLFLCVFVSISQLICLLSGIFQGSVSI 329
            CLF CV+ S+S+++  LS     SV +
Sbjct: 1304 CLFACVYPSVSRVLTCLSACVHLSVRV 1330


>SB_6057| Best HMM Match : ig (HMM E-Value=7.3e-06)
          Length = 814

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +2

Query: 158 VEGLQLRLVYQDLEQERAEAAVDLSGNPAEASANTEQPK-----KIVTFTTNRRSNWK 316
           + G + RLV+ + E   +EA V   G+    S  T +PK     ++ T  T  +S W+
Sbjct: 257 IRGSRDRLVFMETEGGDSEALVSRPGSALPQSPQTSRPKPGIIQRLKTRITTTKSVWQ 314


>SB_54435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 268 AQEDSYFYDKQKEQL----EKIRKKLKLNPEISQKEDK*AEKLRQKHTK 402
           A+ ++  Y+K+  +L    EK++ + K   E+ QKE K   KL+++ T+
Sbjct: 25  AEVNARTYEKEVRKLNIKVEKLKTEKKKRKELRQKEKKRRRKLQKERTQ 73


>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 298 QKEQLEKIRKKLKLNPEISQKEDK*AEKLRQK 393
           +KE++ KI+KK K   +I +K+ K  +K ++K
Sbjct: 14  KKEEIIKIKKKKKSKKKIKKKKKKKKKKKKKK 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,689,670
Number of Sequences: 59808
Number of extensions: 166029
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)