Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11h21
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 2.0
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 27 2.0
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 26 3.5
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 4.7
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 26 4.7
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 4.7
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.7
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 6.2
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 25 8.2
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 280 LRKLPEEYSLHFSKNFEIRRYTIYF 206
L EE+S HF E++R+ +Y+
Sbjct: 75 LAPFDEEFSFHFRGPIELKRFAVYY 99
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = +2
Query: 317 MNTAQGTVIGQLQGPSTAVD-----DMKLWLQKVGSPKSKIEKAAFRNEGNIKCCAFRT 478
MN A + G++ G ++ +++ W G P+S ++ N+ CC F T
Sbjct: 142 MNIAPAIINGEIDG-GIGIECMQQVELERWCVSQGRPRSDVQMLRIDRLANLGCCCFCT 199
>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 723
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = -3
Query: 306 LSPSSNAFFCVNFLKNTPCTFPKTSKSAVTLFTLFTAIITQTSCDFFSNHI 154
+S SSN FFC + TF ++ V FT T FF H+
Sbjct: 553 VSNSSNQFFCSAPKLDPTSTFSGVAQRVVNTFTNLFIPAVPTDSYFFKYHL 603
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 3.5
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +2
Query: 281 KKALELGLKGWVMNTAQGTVIGQLQGPSTAVDDMKLWLQKVGSPKSKIEKAAFRNEGNIK 460
KK +E KG + QG + +QGP TA KL + V K ++A+ + +K
Sbjct: 147 KKHIE-NWKGVELERVQGRALIAIQGPETASVVQKL-IPNVDFSVLKFGQSAYVDFKGVK 204
Query: 461 CCAFRT 478
C R+
Sbjct: 205 CLFSRS 210
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 273 NFLKNTPCTFPKTSKSAVTLFTLFTAIITQTSCDF 169
N L CT P+TS V + I++Q S +F
Sbjct: 478 NRLIKALCTIPRTSSFLVPYYVRLARILSQLSSEF 512
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 4.7
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Frame = -3
Query: 474 LKAQHLIFPSFLNAAFSILDFGLPTFCNQSF----MSSTAVEG--P*S*PITVPCAVFIT 313
LK +L+ S N I+DFG F + +T V G P P T+ ++
Sbjct: 426 LKLDNLVVDS--NCFVKIIDFGSAVVFKYPFEADIVEATGVVGSDPYLAPETLVRKLYDP 483
Query: 312 HPLSPSSNAF-FCVNFLKNTPCTFPKTSKSAVTLFTL 205
+ S+A FC L+ P +PK S ++ LF +
Sbjct: 484 RAVDIWSSAIIFCCMALRRFPWKYPKLSDNSFRLFCM 520
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 4.7
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 25 NIRR--CYETCDVRSLEAACVTILLEMFNVITFRSVSKLQKLERCDMV*KKITRSLSYDG 198
NI R C T +E+A ++LEM + F + +Q L+ C + + +LSY G
Sbjct: 660 NIARLLCQMTSSDAFIESAKNILILEMGSDKQFLRRAAVQLLDSCKHLPDSVITTLSYVG 719
Query: 199 S 201
S
Sbjct: 720 S 720
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 286 FLLRKLPEEYSLHFSKNFE--IRRYTIYFVHCHHNSNFL*FF 167
++L K Y SK+F ++RY IYF +C +NF+ F
Sbjct: 28 YMLYKTYTSYFFMSSKSFVRGVKRYLIYFCYC---ANFIALF 66
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -3
Query: 306 LSPSSNAFFCVNFLKNTPCTFPKTSKSAVTLFTLFTAI 193
+S SSNAF VN L TP S V LF T +
Sbjct: 163 ISFSSNAFLAVNKLLQTPAV--SKSTEGVGLFLCLTRV 198
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 164 QTISHRSSF*SLETERKVITLNISSSIVTHAASKLLTSQVS 42
QT+ SSF S T ++ NIS+S + + ++ Q+S
Sbjct: 37 QTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQIS 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,702
Number of Sequences: 5004
Number of extensions: 44546
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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