Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11h21
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23521-6|AAC46812.1|  469|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z69383-3|CAA93409.1|  261|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U00025-1|ABA54413.1|  589|Caenorhabditis elegans Amp-activated k...    29   3.2  
AY347272-1|AAR06927.1|  589|Caenorhabditis elegans AMP-activated...    29   3.2  
U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U23182-3|AAK70642.1|  252|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U23521-6|AAC46812.1|  469|Caenorhabditis elegans Hypothetical
           protein F41C3.5 protein.
          Length = 469

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 31  RRCYETCDVRSLEAACVTILLEMFNVITFRSVSKLQKLERCD 156
           R C ++CD+  +   C T++ ++F  + F  ++       CD
Sbjct: 229 RGCIDSCDLTQVTGHCATLVEDIFQFLWFGGLNPYDLYRDCD 270


>Z69383-3|CAA93409.1|  261|Caenorhabditis elegans Hypothetical
           protein F13E9.6 protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = -3

Query: 297 SSNAFFCVNFLKNTPCTFPKTSKSAVTLFTLFTA--IITQTSCDFFSN-HITSLELLKFR 127
           +SNA+ C  FL+N+P     TS   V +    T+  II ++S    ++  +  +EL+ F+
Sbjct: 139 ASNAYVCSGFLENSPLL---TSNQKVNILFHHTSLVIINKSSQQIITHKSLFDMELIVFK 195

Query: 126 DRTESYNIK 100
           +   S+  K
Sbjct: 196 EEKTSFVCK 204


>U00025-1|ABA54413.1|  589|Caenorhabditis elegans Amp-activated
           kinase protein 1,isoform a protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 501 YNHLRISNVLKAQHLIFPSFLNAAFSILDFGLPTFCNQSFMSSTAVEGP 355
           +NH+ +   LK ++L+  +  N    I DFGL  +     + STA   P
Sbjct: 139 HNHMIVHRDLKPENLLLDA--NKNIKIADFGLSNYMTDGDLLSTACGSP 185


>AY347272-1|AAR06927.1|  589|Caenorhabditis elegans AMP-activated
           protein kinase alphasubunit 2 protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 501 YNHLRISNVLKAQHLIFPSFLNAAFSILDFGLPTFCNQSFMSSTAVEGP 355
           +NH+ +   LK ++L+  +  N    I DFGL  +     + STA   P
Sbjct: 139 HNHMIVHRDLKPENLLLDA--NKNIKIADFGLSNYMTDGDLLSTACGSP 185


>U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical
           protein C12D5.2 protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = +2

Query: 95  KCLML*LSVRSLNFKSSSDVIWFEKKSQEV*VMMAVNKVNSVTADFEVF 241
           KCL++ ++  +LNF+++ ++    K S+E  +   +N++  +    E F
Sbjct: 83  KCLLVGMNPNALNFRTTKNLTQSLKNSKEEKIKDVINELTYLDCKLEQF 131


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 46  TCDVRSLEAACVTILLEMFNVITFRSVSKLQKLERCDMV*KKITRSLSYDGSEQSK*CNG 225
           TC V ++      IL+    V+   ++  +  + RCD       ++  YDGSEQS+ CN 
Sbjct: 194 TCIVGAVIGVYYMILISWI-VLYIINIFYVNNMGRCD---NPWNQNNCYDGSEQSR-CNK 248

Query: 226 G-FRSFWKSARSILQEVYA 279
           G + +   +A S L    A
Sbjct: 249 GLYSNMTANASSFLNTTMA 267


>U23182-3|AAK70642.1|  252|Caenorhabditis elegans Hypothetical
           protein F40B5.3 protein.
          Length = 252

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -3

Query: 279 CVNFLKNTPCTFPKTSKSAVTLFTLFTAIITQTSCDFFSNHIT 151
           C NF ++  C+F        T     T  + Q   D F NHIT
Sbjct: 39  CENFYRHA-CSFDSPRNLMATALKNLTYELRQKQADLFWNHIT 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,352,131
Number of Sequences: 27780
Number of extensions: 240386
Number of successful extensions: 551
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)