Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11h19
(722 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g40050.1 68418.m04858 F-box family protein contains F-box dom... 38 0.009
At2g42720.1 68415.m05291 F-box family protein contains F-box dom... 36 0.021
At1g66310.1 68414.m07530 F-box family protein contains F-box dom... 36 0.027
At5g39250.1 68418.m04754 F-box family protein ; similar to SKP... 36 0.036
At1g47810.1 68414.m05319 F-box family protein contains F-box dom... 35 0.047
At3g18330.1 68416.m02332 F-box family protein contains Pfam PF00... 34 0.083
At5g52880.1 68418.m06563 F-box family protein ; similar to SKP1... 34 0.11
At3g07870.1 68416.m00962 F-box family protein contains F-box dom... 34 0.11
At5g47300.1 68418.m05831 F-box family protein contains Pfam PF00... 33 0.14
At3g17270.1 68416.m02208 F-box family protein 33 0.14
At2g43260.1 68415.m05377 F-box family protein / S locus-related ... 33 0.14
At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2) iden... 33 0.25
At3g23880.1 68416.m03001 F-box family protein contains F-box dom... 33 0.25
At5g38396.1 68418.m04641 F-box family protein contains F-box dom... 32 0.33
At3g58920.1 68416.m06566 F-box family protein contains F-box dom... 32 0.33
At3g23950.1 68416.m03008 F-box family protein contains Pfam:PF00... 32 0.33
At1g33020.1 68414.m04066 F-box family protein 32 0.33
At5g38386.1 68418.m04638 F-box family protein contains F-box dom... 32 0.44
At3g58820.1 68416.m06556 F-box family protein contains F-box dom... 32 0.44
At1g52650.1 68414.m05945 F-box family protein contains F-box dom... 32 0.44
At1g51320.1 68414.m05771 F-box family protein (FBX11) contains F... 32 0.44
At1g51290.1 68414.m05768 F-box family protein (FBX10) contains P... 32 0.44
At5g38390.1 68418.m04639 F-box family protein contains F-box dom... 31 0.58
At4g09190.1 68417.m01520 F-box family protein contains Pfam PF00... 31 0.58
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 31 0.58
At3g58950.1 68416.m06569 F-box family protein contains F-box dom... 31 0.58
At5g18160.1 68418.m02132 F-box family protein contains Pfam PF00... 31 0.77
At5g02910.1 68418.m00234 F-box family protein similar to ribosom... 31 0.77
At3g58980.1 68416.m06574 F-box family protein contains two F-box... 31 0.77
At3g08750.1 68416.m01017 F-box family protein contains F-box dom... 31 0.77
At1g78750.1 68414.m09178 F-box family protein contains F-box dom... 31 0.77
At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family pr... 31 0.77
At3g13820.1 68416.m01745 F-box family protein contains Pfam PF00... 31 1.0
At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol sp... 31 1.0
At1g32660.1 68414.m04028 F-box family protein contains Pfam prof... 31 1.0
At1g30920.1 68414.m03782 F-box family protein contains F-box dom... 31 1.0
At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family pr... 26 1.6
At4g19940.1 68417.m02921 F-box family protein contains Pfam PF00... 30 1.8
At4g14103.1 68417.m02177 F-box family protein contains F-box dom... 30 1.8
At4g13960.1 68417.m02159 F-box family protein contains F-box dom... 30 1.8
At3g59200.1 68416.m06600 F-box family protein contains F-box dom... 30 1.8
At3g59000.1 68416.m06576 F-box family protein contains F-box dom... 30 1.8
At3g58900.1 68416.m06564 F-box family protein contains F-box dom... 30 1.8
At3g57580.1 68416.m06411 F-box family protein contains Pfam PF00... 30 1.8
At3g50080.1 68416.m05475 F-box family protein (FBL16) contains s... 30 1.8
At3g49040.1 68416.m05357 F-box family protein contains F-box dom... 30 1.8
At3g17480.1 68416.m02233 F-box family protein contains F-box dom... 30 1.8
At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00... 30 1.8
At5g22610.1 68418.m02642 F-box family protein contains F-box dom... 29 2.4
At5g02930.1 68418.m00236 F-box family protein low similarity to ... 29 2.4
At1g69630.1 68414.m08010 F-box family protein contains F-box dom... 29 2.4
At1g15680.1 68414.m01882 F-box family protein contains Pfam:PF00... 29 2.4
At1g13200.1 68414.m01531 F-box family protein contains F-box dom... 29 2.4
At5g45360.1 68418.m05569 F-box family protein similar to SKP1 i... 29 3.1
At5g41840.1 68418.m05095 F-box family protein contains F-box dom... 29 3.1
At5g25860.1 68418.m03068 F-box family protein contains F-box dom... 29 3.1
At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenas... 29 3.1
At2g34280.1 68415.m04194 S locus F-box-related / SLF-related con... 29 3.1
At1g57690.1 68414.m06547 F-box family protein contains F-box dom... 29 3.1
At1g21990.1 68414.m02751 F-box family protein contains F-box dom... 29 3.1
At1g19070.1 68414.m02373 F-box family protein similar to putativ... 29 3.1
At5g65850.1 68418.m08287 F-box family protein 29 4.1
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 29 4.1
At5g49610.1 68418.m06139 F-box family protein contains Pfam PF00... 29 4.1
At5g46870.1 68418.m05775 RNA recognition motif (RRM)-containing ... 29 4.1
At5g03100.1 68418.m00258 F-box family protein contains F-box dom... 29 4.1
At4g13985.1 68417.m02163 F-box family protein contains F-box dom... 29 4.1
At4g02030.1 68417.m00273 expressed protein 29 4.1
At3g23970.1 68416.m03011 F-box family protein contains Pfam:PF00... 29 4.1
At3g17540.1 68416.m02240 F-box family protein similar to hypothe... 29 4.1
At3g17530.1 68416.m02239 F-box family protein contains Pfam prof... 29 4.1
At3g16555.1 68416.m02115 F-box family protein contains F-box dom... 29 4.1
At2g29910.2 68415.m03633 F-box family protein contains F-box dom... 29 4.1
At2g29910.1 68415.m03632 F-box family protein contains F-box dom... 29 4.1
At2g03610.1 68415.m00321 F-box family protein contains F-box dom... 29 4.1
At2g02030.1 68415.m00138 F-box family protein contains F-box dom... 29 4.1
At4g33160.1 68417.m04724 F-box family protein (FBX13) contains s... 28 5.5
At4g28600.1 68417.m04090 calmodulin-binding protein similar to p... 28 5.5
At4g19930.1 68417.m02920 F-box family protein similar to F-box p... 28 5.5
At4g12560.1 68417.m01982 F-box family protein contains F-box dom... 28 5.5
At4g00315.1 68417.m00040 F-box family protein contains F-box dom... 28 5.5
At3g62980.1 68416.m07075 transport inhibitor response 1 (TIR1) (... 28 5.5
At3g42770.1 68416.m04468 F-box family protein contains F-box dom... 28 5.5
At3g23960.1 68416.m03010 F-box family protein contains F-box dom... 28 5.5
At3g20200.1 68416.m02560 protein kinase family protein contains ... 28 5.5
At1g47730.1 68414.m05306 F-box family protein contains Pfam PF00... 28 5.5
At1g27340.1 68414.m03330 F-box family protein contains Pfam PF00... 28 5.5
At3g22710.1 68416.m02865 F-box family protein contains F-box dom... 28 7.2
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr... 28 7.2
At2g31470.1 68415.m03844 F-box family protein contains F-box dom... 28 7.2
At1g50980.1 68414.m05731 F-box family protein contains F-box dom... 28 7.2
At1g50880.1 68414.m05721 F-box family protein contains Pfam PF00... 28 7.2
At1g48400.1 68414.m05406 F-box family protein contains F-box dom... 28 7.2
At1g47915.1 68414.m05336 F-box family protein contains F-box dom... 28 7.2
At1g13780.1 68414.m01617 F-box family protein contains F-box dom... 28 7.2
At1g12870.1 68414.m01495 S locus F-box-related / SLF-related con... 28 7.2
At5g02920.1 68418.m00235 F-box family protein low similarity to ... 27 9.5
At4g33380.1 68417.m04745 expressed protein 27 9.5
At4g29970.1 68417.m04263 F-box family protein contains F-box dom... 27 9.5
At3g58860.1 68416.m06560 F-box family protein contains F-box dom... 27 9.5
At3g49960.1 68416.m05463 peroxidase, putative identical to perox... 27 9.5
At3g17500.1 68416.m02235 F-box family protein contains Pfam prof... 27 9.5
At1g64540.1 68414.m07316 F-box family protein contains F-box dom... 27 9.5
At1g32140.1 68414.m03954 F-box family protein contains F-box dom... 27 9.5
>At5g40050.1 68418.m04858 F-box family protein contains F-box domain
Pfam:PF00646
Length = 415
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 172 IVKMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLN 327
++ S + D ++PL P E+LSHI +FLP K+ + RW+ + +N
Sbjct: 6 VLSSSGSIDSISPL---PDELLSHILSFLPTKRAASTSILSKRWRTLFPLMN 54
>At2g42720.1 68415.m05291 F-box family protein contains F-box domain
Pfam:PF00646
Length = 443
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYH 336
+ S P EIL HI +FL K+ + RWKNV + H
Sbjct: 4 ISSLPDEILEHILSFLSTKEAALTSSLSTRWKNVFVFVPSLH 45
>At1g66310.1 68414.m07530 F-box family protein contains F-box domain
Pfam:PF00646
Length = 442
Score = 35.9 bits (79), Expect = 0.027
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 175 VKMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
V+ ++DEV L P +L HI LP K + K + +W+N+
Sbjct: 9 VRAKQSDDEVDWLRDLPESLLCHILLNLPTKDVVKTSVLSSKWRNL 54
>At5g39250.1 68418.m04754 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 252
Score = 35.5 bits (78), Expect = 0.036
Identities = 19/75 (25%), Positives = 37/75 (49%)
Frame = +1
Query: 220 FPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRL 399
F E+L ++F L + L C VC +W+++ + W C K + +V K R
Sbjct: 2 FSEEVLKNVFPLLEGEDLASCMGVCKQWRDIA----RDDFYWKCQCAKKWPSVCK---RH 54
Query: 400 SRPQITWHELYRSLT 444
P T++++Y++ +
Sbjct: 55 KPPTETYYKMYQTFS 69
>At1g47810.1 68414.m05319 F-box family protein contains F-box domain
Pfam:PF00646
Length = 351
Score = 35.1 bits (77), Expect = 0.047
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +1
Query: 181 MSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFC- 357
M+D E + L+ P ++L IF LPAK L + V W +I + S ++
Sbjct: 1 MADTEKSLQSLDPIPVDVLFEIFLNLPAKFLARFVCVSKLWAKIIRNQDFIRSFSFRSFR 60
Query: 358 -GKDFKNVYKFAHRLSRPQITWHELYRS 438
K + ++ F +++ Q W+ +S
Sbjct: 61 ENKQHRLLFAFKNQIKGYQENWYFFSKS 88
>At3g18330.1 68416.m02332 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 376
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 208 PLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDF 369
P+ + P E++ I +F+PA L + C W +I ++ Y K+F
Sbjct: 2 PMPNLPKELVEEILSFVPATYLKRLSATCKPWNRLIHNDKRFARKHYDNAAKEF 55
>At5g52880.1 68418.m06563 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 269
Score = 33.9 bits (74), Expect = 0.11
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = +1
Query: 136 NFYIGSDKLAHIIVKM--SDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKN 309
N I K A + +K + E+E + S P +IL HIF+FL L +V W
Sbjct: 85 NLAIVEFKQAKVALKRRSKNREEEDIDIPSLPQDILIHIFSFLEISSLVSSAQVSRSWNQ 144
Query: 310 VIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRPQITWHELYR 435
+SLW F +K R+ + I W E ++
Sbjct: 145 A----THENSLWQSQFDLHFN--HKVLIRM-QSDIDWREAFK 179
>At3g07870.1 68416.m00962 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +1
Query: 178 KMSDNEDEVTP---LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
K++D+ D V LES P +I++ IF+ LP + + VC W++V+
Sbjct: 11 KITDDVDGVGVGGGLESLPEDIIADIFSRLPISSIARLMFVCRSWRSVL 59
>At5g47300.1 68418.m05831 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain; similar to unknown protein
(emb|CAB62106.1)
Length = 416
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFA 390
L P ++L I +PA L + R C +W N+ + ++ KDF+N+
Sbjct: 43 LSDLPGDLLEEILCRVPATSLKQLRSTCKQWNNLFNN-GRFTRKHLDKAPKDFQNLMLSD 101
Query: 391 HRLSRPQITWH 423
R+ +++H
Sbjct: 102 SRVFSMSVSFH 112
>At3g17270.1 68416.m02208 F-box family protein
Length = 134
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 202 VTPLESFPTEILSHIFTFLPAKQLTKCREVCIRW 303
+T + + P E+ S I + +PAK L K + +C RW
Sbjct: 1 MTTIPNLPDELESEILSRVPAKSLAKWKTICKRW 34
>At2g43260.1 68415.m05377 F-box family protein / S locus-related
weak similarity to S locus F-box (SLF)-S2 protein
[Antirrhinum hispanicum] GI:13161526; contains TIGRFAM
TIGR01640: F-box protein interaction domain
Length = 420
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +1
Query: 181 MSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 321
M + E+ ++ P E+L + LP K + KCR V +W++++++
Sbjct: 1 MGEEEENPNSIDILP-ELLEEVLLRLPTKSILKCRIVSKQWRSLLES 46
>At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2)
identical to SKP1 interacting partner 2 GI:10716949 from
[Arabidopsis thaliana]
Length = 527
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 223 PTEILSHIFTFLPAKQLTKCREVCIRW 303
P E L+H+F FL A +C VC RW
Sbjct: 47 PDECLAHVFQFLGAGDRKRCSLVCKRW 73
>At3g23880.1 68416.m03001 F-box family protein contains F-box domain
Pfam:PF00646
Length = 364
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 181 MSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
M + E+ + P E++ I LP K LT+ + VC W+++I
Sbjct: 1 MDETTREMFSPHNLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLI 45
>At5g38396.1 68418.m04641 F-box family protein contains F-box domain
Pfam:PF00646
Length = 462
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYH 336
L + P E++ HI +FL K+ + RW+N++ ++ H
Sbjct: 4 LRNIPDELICHILSFLTTKEAALTSVLSKRWRNLLAFVSNLH 45
>At3g58920.1 68416.m06566 F-box family protein contains F-box domain
Pfam:PF00646
Length = 470
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK 330
+ + P EI+ HI +FL AK+ + RW+N+ + K
Sbjct: 4 ISNLPNEIICHIVSFLSAKEAAFASVLSKRWQNLFTIVQK 43
>At3g23950.1 68416.m03008 F-box family protein contains Pfam:PF00646
F-box domain
Length = 418
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 217 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 321
+ P E+ + LP K L + R +C WK VID+
Sbjct: 2 NIPPELTFEVLVRLPLKSLARFRSMCKEWKLVIDS 36
>At1g33020.1 68414.m04066 F-box family protein
Length = 548
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
L+S PT+++ IF+ + K + +CR V WK+++
Sbjct: 7 LDSIPTDLILEIFSRMSTKSIGRCRCVSKLWKSML 41
>At5g38386.1 68418.m04638 F-box family protein contains F-box domain
Pfam:PF00646
Length = 403
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
L + P E+L HI +FL K+ + RW+N+I
Sbjct: 4 LSNLPDELLCHIMSFLTTKEAALISVLSKRWRNLI 38
>At3g58820.1 68416.m06556 F-box family protein contains F-box domain
Pfam:PF00646
Length = 413
Score = 31.9 bits (69), Expect = 0.44
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
+ S P E+L HI +FL K+ + RW+N+I
Sbjct: 4 VSSLPNELLCHILSFLTTKEAALTSILSKRWRNLI 38
>At1g52650.1 68414.m05945 F-box family protein contains F-box domain
Pfam:PF00646
Length = 465
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
+ S P +L +IF+FL K+ +C RW+N++
Sbjct: 4 VSSLPEGVLCNIFSFLTTKEAALTSILCKRWRNLL 38
>At1g51320.1 68414.m05771 F-box family protein (FBX11) contains
F-box domain PF:00646
Length = 375
Score = 31.9 bits (69), Expect = 0.44
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +1
Query: 217 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWY-----KFCGKDFKNVY 381
+ P E++ I +P + L K R VC +W ++ D NK+ + + + + +Y
Sbjct: 5 NLPWELVEEILCRVPPQSLVKFRTVCKQWNSLFDD-NKFVNDHFVQSQPQLIFRTESKIY 63
Query: 382 KFAHRLSRPQITWHEL 429
A P+I HEL
Sbjct: 64 SVAVNFKGPRIEVHEL 79
>At1g51290.1 68414.m05768 F-box family protein (FBX10) contains Pfam
F-box domain PF:00646; similar to F-box protein family,
AtFBX9 (GP:20197985) {Arabidopsis thaliana}
Length = 377
Score = 31.9 bits (69), Expect = 0.44
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +1
Query: 217 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKY---HSLWYK--FCGKDFKNVY 381
+ P E++ I +P + L + R VC +W ++ D NK+ H + + F + +Y
Sbjct: 5 NLPWELVEEILYRVPPQSLARFRTVCKQWNSLFDD-NKFVNDHLVRSRPQFMFRTDSKMY 63
Query: 382 KFAHRLSRPQITWHEL 429
A S P I HEL
Sbjct: 64 SVAVNFSGPWIEVHEL 79
>At5g38390.1 68418.m04639 F-box family protein contains F-box domain
Pfam:PF00646
Length = 456
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
L + P E+L HI +FL K+ + RW+N+I
Sbjct: 4 LSNLPYELLCHILSFLTTKEAALTSVLSKRWRNLI 38
>At4g09190.1 68417.m01520 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; similar to Probable
disease resistance RPP8-like protein 2
(Swiss-Prot:Q9MAG6) [Arabidopsis thaliana]
Length = 383
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 172 IVKMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 321
I + SD+ + + E P +++ I + LPAK + + R V W ++I T
Sbjct: 7 ITQFSDDNNR-SQREHIPLDLIVEIVSSLPAKSIVRFRSVSKLWSSIITT 55
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 178 KMSDNEDEVTPLES---FPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 321
+ SD+E +V P ++L I +FLP + + VC RW ++ +
Sbjct: 26 EQSDDEAKVETFSMDSLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSS 76
>At3g58950.1 68416.m06569 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 217 SFPTEILSHIFTFLPAKQLTKCREVCIRWKN 309
S P E+L HI +FL K+ V RW+N
Sbjct: 6 SLPDEVLCHILSFLTTKEAALASVVSKRWRN 36
>At5g18160.1 68418.m02132 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; similar to Probable
disease resistance RPP8-like protein 2
(Swiss-Prot:Q9MAG6) [Arabidopsis thaliana]
Length = 379
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +1
Query: 148 GSDKLAHIIVKMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 321
G+ K + + + + ++ S P +I I + LPAK + + R V W ++ T
Sbjct: 10 GTTKSSSTLTTRCSHGNHISQSNSIPLDITIEILSRLPAKSIVRSRSVSKLWSSITTT 67
>At5g02910.1 68418.m00234 F-box family protein similar to ribosomal
RNA apurinic site specific lyase [Triticum aestivum]
GI:6505722; contains F-box domain Pfam:PF00646
Length = 458
Score = 31.1 bits (67), Expect = 0.77
Identities = 24/85 (28%), Positives = 39/85 (45%)
Frame = +1
Query: 187 DNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKD 366
D+ D + + S P EIL HI + +P K + + RW+ V ++ SL D
Sbjct: 5 DSIDGMDFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYV---WSETPSLSIDCRRAD 61
Query: 367 FKNVYKFAHRLSRPQITWHELYRSL 441
++ K S P+IT L+ +L
Sbjct: 62 PNSIDKTLSFFSAPKITSFHLHTTL 86
>At3g58980.1 68416.m06574 F-box family protein contains two F-box
domains Pfam:PF00646
Length = 594
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK 330
+ + P EI+ HI +FL AK+ + RW+N+ + K
Sbjct: 4 ISNLPNEIICHIVSFLSAKEAAFASILSKRWRNLFTIVIK 43
>At3g08750.1 68416.m01017 F-box family protein contains F-box domain
Pfam:PF00646
Length = 369
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
L S P E++ I +PA+ L + + C +W N+I
Sbjct: 9 LPSLPFELIEEILYKIPAESLIRFKSTCKKWYNLI 43
>At1g78750.1 68414.m09178 F-box family protein contains F-box domain
Pfam:PF00646
Length = 458
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/65 (21%), Positives = 30/65 (46%)
Frame = +1
Query: 199 EVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNV 378
EV + + P +L + +LP K + K + RW+N+ + ++ +C +N
Sbjct: 16 EVDWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPGFN---LSYCDFHVRNT 72
Query: 379 YKFAH 393
+ + H
Sbjct: 73 FSYDH 77
>At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family
protein / F-box family protein contains Pfam profiles:
PF00646 F-box domain, PF00010 helix-loop-helix
DNA-binding domain
Length = 828
Score = 31.1 bits (67), Expect = 0.77
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 190 NEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 321
NE V S P +++ IF LP K + + + + +W++ I++
Sbjct: 61 NEKAVFAPSSLPNDVVEEIFLRLPVKAIIQLKSLSKQWRSTIES 104
>At3g13820.1 68416.m01745 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 415
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 202 VTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
+T + + P E+L I + P L R C +W N+
Sbjct: 1 MTTMSNLPAEVLEEILSRTPVTSLRTMRSTCKKWNNL 37
>At1g65990.1 68414.m07488 type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein
similar to type 2 peroxiredoxin [Brassica rapa subsp.
pekinensis] GI:4928472; contains Pfam profiles PF00646:
F-box domain, PF00578: AhpC/TSA family
Length = 553
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +1
Query: 109 NFKMIFD*INFYIGSDKLAHIIVKMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCRE 288
N K+I +N G D ++KM+ T + + PT++L I + +P K + R
Sbjct: 132 NLKVIV--VNVGSGGDCSLFQLMKMT-----TTTMSNLPTDLLEEIISRVPRKYMRAVRL 184
Query: 289 VCIRWKNV 312
C RW +
Sbjct: 185 TCKRWNGM 192
>At1g32660.1 68414.m04028 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 446
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 187 DNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
D L+S P ++ I T +PAK L K R V W ++I
Sbjct: 52 DTNPSKLELDSLPLDLKMAILTRIPAKSLMKLRCVSKMWSSII 94
>At1g30920.1 68414.m03782 F-box family protein contains F-box domain
Pfam:PF00646
Length = 400
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 190 NEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
N +E T +S P +++ I + LP+K + +CR V W+++I
Sbjct: 2 NSEENT--DSIPIDLILDILSRLPSKSIARCRCVSKLWESMI 41
>At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family
protein / F-box family protein contains Pfam profiles
PF00514: Armadillo/beta-catenin-like repeat, PF00646:
F-box domain; similar to F-box protein FBL2 (GI:6010699)
[Rattus norvegicus]
Length = 928
Score = 26.2 bits (55), Expect(2) = 1.6
Identities = 24/87 (27%), Positives = 40/87 (45%)
Frame = +1
Query: 415 TWHELYRSLTLWRQLHLARQHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLD 594
TW L S LW L L R H + + A ++A+ + +R GV + +++
Sbjct: 69 TWRSLGASSFLWSSLDL-RAHKFDLSMAASLATRCVDLQKIR--FRGVDSADAIIH---- 121
Query: 595 TLQRSKRAVIYGDYNRYVETDDTVLLM 675
L+ I GDY R + TD T+ ++
Sbjct: 122 -LKARSLLEISGDYCRKI-TDATLSMI 146
Score = 22.2 bits (45), Expect(2) = 1.6
Identities = 8/32 (25%), Positives = 15/32 (46%)
Frame = +1
Query: 217 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
S P + + H+FT L + C W+++
Sbjct: 42 SLPYDTVFHLFTRLNYRDRASLASTCRTWRSL 73
>At4g19940.1 68417.m02921 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain;similar to F-box protein Fbx8
(GI:6164735) [Homo
sapiens]|8737673|gb|AV566223.1|AV566223
Length = 411
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 208 PLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLN 327
P+ P +++ I T LPAK L + + V W ++I + N
Sbjct: 31 PIPEIPFDLVIEILTRLPAKSLMRFKSVSKLWSSLICSRN 70
>At4g14103.1 68417.m02177 F-box family protein contains F-box domain
Pfam:PF00646
Length = 381
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWK 306
+ S P +I SHI +FLP K+ + +W+
Sbjct: 10 ISSLPDDISSHILSFLPTKEAASTSVLSKKWR 41
>At4g13960.1 68417.m02159 F-box family protein contains F-box domain
Pfam:PF00646
Length = 434
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
+ S P E+L HI +FL K+ + RW+N+
Sbjct: 4 VSSLPDEVLYHILSFLTTKEAALTSILSKRWRNL 37
>At3g59200.1 68416.m06600 F-box family protein contains F-box domain
Pfam:PF00646
Length = 520
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWK 306
+ S P ++SHI +FLP K+ + +W+
Sbjct: 9 ISSLPNPVVSHILSFLPTKEAASTSVLSKKWR 40
>At3g59000.1 68416.m06576 F-box family protein contains F-box domain
Pfam:PF00646
Length = 491
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 217 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
S P E+LSHI +FL K+ + RW+ +I
Sbjct: 6 SLPDELLSHILSFLTTKEAALTSLLSKRWRYLI 38
>At3g58900.1 68416.m06564 F-box family protein contains F-box domain
Pfam:PF00646
Length = 327
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 217 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
S P E+L HI +FL K+ + RW+N+
Sbjct: 6 SLPNELLYHILSFLSTKEAALTSVLSKRWRNL 37
>At3g57580.1 68416.m06411 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; similar to F-box
protein family, AtFBX8 (GI:20197464) [Arabidopsis
thaliana]
Length = 408
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 217 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
S PT+++ IF LP+K + + R + +W +++
Sbjct: 9 SLPTDLIREIFARLPSKSVARFRTLSKQWASIL 41
>At3g50080.1 68416.m05475 F-box family protein (FBL16) contains
similarity to SKP1 interacting partner 2 GI:10716949
from [Arabidopsis thaliana]; contains Pfam profile:
PF00646 F-box domain
Length = 522
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 217 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKY 333
+ P + L+HIF FL A +C V RW ++D N++
Sbjct: 43 NLPDDCLAHIFQFLSAGDRKRCSLVSKRWL-LVDGQNRH 80
>At3g49040.1 68416.m05357 F-box family protein contains F-box domain
Pfam:PF00646
Length = 415
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 187 DNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLN--KYHSLWYKFCG 360
+NED ++ L +L HI + LP K + + RW++V T+ K+ S +++
Sbjct: 8 ENEDRISELHE---ALLVHIMSSLPTKTVVATSVLSKRWRHVWKTVQNLKFVSKYHQTFS 64
Query: 361 KDFKNVYKF 387
+D VY+F
Sbjct: 65 ED---VYRF 70
>At3g17480.1 68416.m02233 F-box family protein contains F-box domain
Pfam:PF00646
Length = 373
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = +1
Query: 205 TPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYK 384
+P+ +++ I + +PA L + R C +W +++ ++ + K++ ++
Sbjct: 6 SPMSVLTEDLVEDILSRVPATSLVRLRSTCKQWNAILND-RRFIKKHFDTAEKEYLDMLL 64
Query: 385 FAHRLSRPQITWHELY----RSLTLWRQLHL 465
+ R+S + H L+ S+ L R+L+L
Sbjct: 65 RSLRVSSMSVNLHGLHDNIDPSIELKRELNL 95
>At1g47790.1 68414.m05317 F-box family protein contains Pfam:PF00646
F-box domain
Length = 389
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 208 PLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
P SFP ++ S I LP K + + R V W ++I
Sbjct: 21 PTSSFPLDLASEILLRLPVKSVVRFRCVSKLWSSII 56
>At5g22610.1 68418.m02642 F-box family protein contains F-box domain
Pfam:PF00646
Length = 472
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
+ P +LS I ++LP K + + + RWK+V
Sbjct: 20 ISKLPEVLLSQILSYLPTKDIVRTSVLSKRWKSV 53
>At5g02930.1 68418.m00236 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain Pfam:PF00646
Length = 469
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +1
Query: 202 VTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGK 363
V + P +L HIF+++P + + + RW++V W K K
Sbjct: 27 VDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFEWLKVSPK 80
>At1g69630.1 68414.m08010 F-box family protein contains F-box domain
Pfam:PF00646
Length = 451
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 154 DKLAHIIVKMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
D+ H+ K SD D ++ L P +L + LP K + K + RW+N+
Sbjct: 4 DREKHVRAKGSDEVDWISKL---PDCLLCEVLLNLPTKDVVKTSVLSRRWRNL 53
>At1g15680.1 68414.m01882 F-box family protein contains Pfam:PF00646
F-box domain
Length = 410
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 223 PTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 321
P E+L+ I LP +T+ + VC W+++I++
Sbjct: 20 PEELLAEIVARLPFISITRFKSVCKGWRSLIES 52
>At1g13200.1 68414.m01531 F-box family protein contains F-box domain
Pfam:PF00646; contains TIGRFAM TIGR01640: F-box protein
interaction domain
Length = 435
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 190 NEDEVTPL-ESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 321
NE V + S P ++L IF P K L + + + +W++ I++
Sbjct: 32 NEKRVLMVPSSLPNDVLEEIFLRFPVKALIRLKSLSKQWRSTIES 76
>At5g45360.1 68418.m05569 F-box family protein similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 316
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 223 PTEILSHIFTFLPAKQLTKCREVC 294
PTE+ HI FL ++ L C VC
Sbjct: 75 PTELFRHILKFLSSEDLVSCSLVC 98
>At5g41840.1 68418.m05095 F-box family protein contains F-box domain
Pfam:PF00646
Length = 540
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
+ P ++ HI +FLP K+ + RWK ++
Sbjct: 16 ISGLPDALICHILSFLPTKEAASTTVLAKRWKPLL 50
>At5g25860.1 68418.m03068 F-box family protein contains F-box domain
Pfam:PF00646
Length = 448
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 223 PTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
P EIL+ I ++LP K+ + RW+N+
Sbjct: 18 PDEILAKILSYLPTKRAVSTSLISKRWRNL 47
>At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenase
A, chloroplast (GAPA) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit A
identical to SP|P25856 Glyceraldehyde 3-phosphate
dehydrogenase A, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit A) {Arabidopsis thaliana}
Length = 396
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = -1
Query: 326 LRVSMTFFQRMQTSRHFVNCFAGRKVKMCDNISVGNDSKGVTSSS 192
L+V++ F R+ R+F+ C+ GRK D I++ ND+ GV +S
Sbjct: 62 LKVAINGFGRI--GRNFLRCWHGRKDSPLDIIAI-NDTGGVKQAS 103
>At2g34280.1 68415.m04194 S locus F-box-related / SLF-related
contains Pfam PF00646: F-box domain; contains weak hit
to TIGRFAM TIGR01640 : F-box protein interaction domain;
weakly similar to self-incompatibility (S-) locus F-box
(GI:29420811) [Prunus mume]
Length = 391
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
++ P +++ HI L K L C+ V +W++ I
Sbjct: 1 MDLLPYDVVEHILERLDVKSLLNCKSVSKQWRSTI 35
>At1g57690.1 68414.m06547 F-box family protein contains F-box domain
Pfam:PF00646
Length = 330
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 199 EVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK 330
EV + S P IL HI K + + RW++ D +NK
Sbjct: 24 EVDIISSLPDVILQHILFSFQTKYAIRTSVLSKRWRHEADAINK 67
>At1g21990.1 68414.m02751 F-box family protein contains F-box domain
Pfam:PF00646
Length = 465
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 223 PTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK 330
P EIL I +FLP + RW+N++ ++K
Sbjct: 15 PDEILGKILSFLPTHHAATTSVLSKRWRNLLPLVDK 50
>At1g19070.1 68414.m02373 F-box family protein similar to putative
non-LTR retroelement reverse transcriptase GI:3738337
from [Arabidopsis thaliana] ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 83
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 229 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYH 336
EI+ HI +FLP K+ + RW+N+ H
Sbjct: 10 EIICHILSFLPTKESALTSVLSKRWRNLFALTPNLH 45
>At5g65850.1 68418.m08287 F-box family protein
Length = 392
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 178 KMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
K S N+ E + P +I+ I LPAK + CR V W +VI
Sbjct: 23 KTSPNKTEKSV--QIPVDIIIEILLRLPAKSIATCRCVSKLWISVI 66
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSL-----WYKFCGKDFKN 375
LE P E + +F+ K++ K + C+R I+ +KY ++ Y+F +K+
Sbjct: 189 LEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKD 248
Query: 376 VY 381
Y
Sbjct: 249 CY 250
>At5g49610.1 68418.m06139 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain; similar to unknown protein
(gb|AAF30317.1)
Length = 359
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 220 FPTEILSHIFTFLPAKQLTKCREVCIRW 303
FP E++ I LP K L + + VC W
Sbjct: 9 FPDEVILQILARLPVKSLFRFKSVCKSW 36
>At5g46870.1 68418.m05775 RNA recognition motif (RRM)-containing
protein similar to unknown protein (pir||C71447)
Length = 295
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 480 VVLSSEVQLPPQSQRPVELVPSDLRTGEPVSEFVNVFK 367
V +S + QLPP + +E + ++ P E V+VF+
Sbjct: 73 VTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFR 110
>At5g03100.1 68418.m00258 F-box family protein contains F-box domain
Pfam:PF00646
Length = 307
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
+ S P EIL HI P K + + RWK+V
Sbjct: 11 ISSLPDEILHHILANTPTKLAIRTSVLSKRWKHV 44
>At4g13985.1 68417.m02163 F-box family protein contains F-box domain
Pfam:PF00646
Length = 459
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 175 VKMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
V + D V L + P +L I LP K + K + RW+NV
Sbjct: 9 VSAKPSGDRVDRLRNLPDCLLFKILLNLPTKDVVKLSVLSRRWRNV 54
>At4g02030.1 68417.m00273 expressed protein
Length = 694
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = +1
Query: 586 DLDTLQRSKRAVIYGDYNRYVETDDTVLLMNSNL 687
++ L + ++Y +YN+++ DT+ M SN+
Sbjct: 76 EIKNLDTDLQMLVYENYNKFISATDTIKRMKSNI 109
>At3g23970.1 68416.m03011 F-box family protein contains Pfam:PF00646
F-box domain
Length = 413
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 217 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 321
+ P E+ + LP K L + R V WK VID+
Sbjct: 2 NIPPELTFEVLVRLPLKSLARFRSVRKEWKLVIDS 36
>At3g17540.1 68416.m02240 F-box family protein similar to
hypothetical protein GB:AAD18122 from [Arabidopsis
thaliana];contains Pfam PF00646: F-box domain; contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 396
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRW 303
+ P EI S I + +P K L K C RW
Sbjct: 7 ISDLPHEIESEILSRVPTKSLAKLHTTCKRW 37
>At3g17530.1 68416.m02239 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 388
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRW 303
+ P ++ S I + +PAK L K + C RW
Sbjct: 3 ISDLPHDLESEILSRVPAKSLAKWKTTCKRW 33
>At3g16555.1 68416.m02115 F-box family protein contains F-box domain
Pfam:PF00646
Length = 349
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 223 PTEILSHIFTFLPAKQLTKCREVCIRWKNVID 318
P E+ I + LP + L + R VC RW + D
Sbjct: 5 PWELEEDILSRLPPRSLVQFRSVCKRWNALFD 36
>At2g29910.2 68415.m03633 F-box family protein contains F-box domain
Pfam:PF00646
Length = 335
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK 330
+ S P EIL + + LP K+ + RW N+ ++K
Sbjct: 7 ISSLPDEILGKVLSLLPTKRAASTAVLSKRWNNLPALVDK 46
>At2g29910.1 68415.m03632 F-box family protein contains F-box domain
Pfam:PF00646
Length = 352
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK 330
+ S P EIL + + LP K+ + RW N+ ++K
Sbjct: 7 ISSLPDEILGKVLSLLPTKRAASTAVLSKRWNNLPALVDK 46
>At2g03610.1 68415.m00321 F-box family protein contains F-box domain
Pfam:PF00646
Length = 216
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 229 EILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYK 384
++L I L + + + VC W +V T Y S W + G F YK
Sbjct: 28 DLLRPILESLSSIDFHRAKTVCSDWYSVWKTCKGYDSKWNQNSGSIFDMAYK 79
>At2g02030.1 68415.m00138 F-box family protein contains F-box domain
Pfam:PF00646
Length = 334
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 223 PTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
P EI+ I LP K LT+ + V W+ +I
Sbjct: 40 PNEIVEEILVRLPVKSLTRFQTVSKHWRTLI 70
>At4g33160.1 68417.m04724 F-box family protein (FBX13) contains
similarity to fimbriata GI:547307 from [Antirrhinum
majus]
Length = 417
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 208 PLESFPTEILSHIFTFLPAKQLTKCREVCIRWKN 309
P++ ++L + ++LP + VC RWK+
Sbjct: 26 PMDDLNDDVLERVLSWLPTSCFFRMSSVCKRWKS 59
>At4g28600.1 68417.m04090 calmodulin-binding protein similar to
pollen-specific calmodulin-binding protein MPCBP
GI:10086260 from [Zea mays]
Length = 739
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +1
Query: 415 TWHEL---YRSLTLWRQLHLARQHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYY 585
TWH+L Y +L+ WR A ++V I+G Y R G +A
Sbjct: 594 TWHDLAHIYINLSQWRDAESCLSRSRLIAPYSSVRYHIEGVLYNRRGQLEEAMEAFTTAL 653
Query: 586 DLDTL 600
D+D +
Sbjct: 654 DIDPM 658
>At4g19930.1 68417.m02920 F-box family protein similar to F-box
protein family, AtFBX8 (GI:20197464) {Arabidopsis
thaliana}; contains Pfam PF00646: F-box domain
Length = 431
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 208 PLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
P+ P +++ I T LPAK L + + V W ++I
Sbjct: 39 PMPYIPFDLVIEILTRLPAKSLMRFKSVSKLWSSLI 74
>At4g12560.1 68417.m01982 F-box family protein contains F-box domain
Pfam:PF00646
Length = 413
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCR 285
+ + P +I++ IF LPAK L +CR
Sbjct: 1 MATIPMDIVNDIFLRLPAKTLVRCR 25
>At4g00315.1 68417.m00040 F-box family protein contains F-box domain
Pfam:PF00646
Length = 441
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 223 PTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
P E+L + +FLP K + + +RWK++
Sbjct: 8 PDELLVKVLSFLPTKDAVRTSLLSMRWKSL 37
>At3g62980.1 68416.m07075 transport inhibitor response 1 (TIR1)
(FBL1) E3 ubiquitin ligase SCF complex F-box subunit;
identical to transport inhibitor response 1 GI:2352492
from [Arabidopsis thaliana]
Length = 594
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 217 SFPTEILSHIFTFLPA-KQLTKCREVCIRWKNV 312
SFP E+L H+F+F+ K VC W +
Sbjct: 8 SFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40
>At3g42770.1 68416.m04468 F-box family protein contains F-box domain
Pfam:PF00646
Length = 532
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
+ P E+L I +FLP K+ T + RW+ +
Sbjct: 1 MNCLPDELLVQILSFLPTKEATSTSLLSKRWRTL 34
>At3g23960.1 68416.m03010 F-box family protein contains F-box domain
Pfam:PF00646
Length = 402
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 223 PTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
P ++L IF LP K + CR V W V+
Sbjct: 32 PIDLLIEIFLKLPVKSIATCRSVSKFWTYVL 62
>At3g20200.1 68416.m02560 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 780
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 160 LAHIIVKMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHS 339
L H+I++ S + E+T + E L F +++ +C +V + N++ +L +Y S
Sbjct: 48 LLHVILRSSSDSGEITAEKHKQAENLFVTFHCYCSRKEIQCLDVTLEDDNIVKSLAEYVS 107
>At1g47730.1 68414.m05306 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; identical to
hypothetical protein GB:AAD46016 GI:5668790 from
(Arabidopsis thaliana)
Length = 391
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 217 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
S P ++ S IF+ LPAK + + R V W ++
Sbjct: 24 SLPLDLTSEIFSRLPAKSVVRFRCVSKLWSSI 55
>At1g27340.1 68414.m03330 F-box family protein contains Pfam
PF00646: F-box domain; similar to fim protein; similar
to ESTs gb|T42445, gb|T76780, gb|AA650733, and
emb|Z17748
Length = 467
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 178 KMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 321
++S N D+ + FP ++ + + LP + R VC +W +ID+
Sbjct: 107 EISGNMDQEI-WQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDS 153
>At3g22710.1 68416.m02865 F-box family protein contains F-box domain
Pfam:PF00646
Length = 326
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFA 390
+ P +++ I + +PA + K R C +W N I ++ + K+ +
Sbjct: 3 MPDLPPDLVEEILSRVPATSVKKLRSTCTQW-NAIFKDERFTEKHFSKAPKESMVLMLKE 61
Query: 391 HRL--SRPQITWHELYRSLTLWRQLHLARQHY 480
HR+ + + W+ T W QL + + Y
Sbjct: 62 HRVCPDKRLVVWNPCLGE-TKWIQLKVDYRRY 92
>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
protein / F-box family protein contains similarity to
F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
contains Pfam profiles PF00514:
Armadillo/beta-catenin-like repeat, PF00646: F-box
domain
Length = 930
Score = 27.9 bits (59), Expect = 7.2
Identities = 25/87 (28%), Positives = 40/87 (45%)
Frame = +1
Query: 415 TWHELYRSLTLWRQLHLARQHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLD 594
TW L S LW L L R H + + A ++AS YLR GV + +++
Sbjct: 76 TWRCLGASSCLWTSLDL-RPHKFDASMAASLASRCVNLHYLR--FRGVESADSLIH---- 128
Query: 595 TLQRSKRAVIYGDYNRYVETDDTVLLM 675
L+ + GDY + + TD T+ ++
Sbjct: 129 -LKARNLIEVSGDYCKKI-TDATLSMI 153
>At2g31470.1 68415.m03844 F-box family protein contains F-box domain
Pfam:PF00646
Length = 387
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 214 ESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
E P +++ IF+ P K + +CR V W +++
Sbjct: 23 EPIPIDLVIEIFSRSPVKSIARCRCVSKLWASIL 56
>At1g50980.1 68414.m05731 F-box family protein contains F-box domain
Pfam:PF00646
Length = 370
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 193 EDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
E ++ + FP ++L I + LP+K + + RW+++
Sbjct: 28 EKKIRTISEFPDKVLLKILSLLPSKDVVATGVLSKRWRSL 67
>At1g50880.1 68414.m05721 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 279
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
+ S P ++ S I LPAK + + R V +W ++
Sbjct: 22 MSSIPLDVTSKILAKLPAKSVLRARCVSKQWSSI 55
>At1g48400.1 68414.m05406 F-box family protein contains F-box domain
Pfam:PF00646
Length = 513
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
+ + P EIL I + LP K + RW+N++
Sbjct: 12 ISNLPDEILGKILSLLPTKVAASTSVLSKRWRNLL 46
>At1g47915.1 68414.m05336 F-box family protein contains F-box domain
Pfam:PF00646 ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 73
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
+ + P EIL I + LP K + RW+N++
Sbjct: 10 ISNLPDEILGKILSLLPTKVAASTSVLSKRWRNLL 44
>At1g13780.1 68414.m01617 F-box family protein contains F-box domain
Pfam:PF00646
Length = 451
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 312
+ P ++S I LP K K + RWKN+
Sbjct: 7 ISELPESLISQILLHLPTKASVKTSVLSTRWKNL 40
>At1g12870.1 68414.m01495 S locus F-box-related / SLF-related
contains F-box domain Pfam:PF00646; contains TIGRFAM
TIGR01640: F-box protein interaction domain; weakly
similar to self-incompatibility (S-) locus F-box
(GI:29420811) [Prunus mume]
Length = 416
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +1
Query: 217 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDT 321
S P +++ IF LP K L + + + +W++ +++
Sbjct: 32 SLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLES 66
>At5g02920.1 68418.m00235 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain Pfam:PF00646
Length = 345
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLT-KCREVCIRWKNV 312
+ + P EIL HI +F+P L + + RW++V
Sbjct: 30 ISNLPDEILHHILSFIPETNLVIRTSVLSKRWRHV 64
>At4g33380.1 68417.m04745 expressed protein
Length = 328
Score = 27.5 bits (58), Expect = 9.5
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Frame = +1
Query: 157 KLAHIIVKMSDNEDEVTP--LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNK 330
KL H V +++ E++P EIL + +F +T+ REV W+N + L +
Sbjct: 88 KLKHE-VSTAESSTELSPNVKHKLVDEILQRLKSFEDKSNVTQLREVVETWRN--EKLEE 144
Query: 331 YHSLWYKFCGKDFKNVYKFAHRLSRP-QITWHELYRSLTLWRQLHLARQHYDE 486
L G + + + A L R ++ W L + W + +D+
Sbjct: 145 AKELIQGQNGVNSTLIVEEAGMLVRALELEWDVLSEEIGFWLPAEVTNVEHDD 197
>At4g29970.1 68417.m04263 F-box family protein contains F-box domain
Pfam:PF00646
Length = 283
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 178 KMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
K D +E + P E++ I LPAK + V W ++I
Sbjct: 3 KKQDQSEENDLFSNIPLELMIEILLKLPAKSIANLIFVSKHWSSII 48
>At3g58860.1 68416.m06560 F-box family protein contains F-box domain
Pfam:PF00646
Length = 457
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +1
Query: 190 NEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWK 306
+ +++ P E++SHI + LP K+ + +W+
Sbjct: 2 DSEKMDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWR 40
>At3g49960.1 68416.m05463 peroxidase, putative identical to
peroxidase ATP21a [Arabidopsis thaliana]
gi|1546696|emb|CAA67339
Length = 329
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 322 LNKYHSLWYKFCGKDFKNVYKF 387
L+ H+L + CGK FK ++KF
Sbjct: 193 LSAAHTLGFAHCGKVFKRIHKF 214
>At3g17500.1 68416.m02235 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 438
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKN 309
+ + P +++ I + +PA L + R C W N
Sbjct: 1 MSNLPLDLVEEILSRVPATSLKRLRSTCKSWNN 33
>At1g64540.1 68414.m07316 F-box family protein contains F-box domain
Pfam:PF00646
Length = 444
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 211 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI 315
+ + P EIL I + LP K + RW+N+I
Sbjct: 7 ISNLPDEILGKILSLLPTKLGVSTSVLSKRWRNLI 41
>At1g32140.1 68414.m03954 F-box family protein contains F-box domain
Pfam:PF00646
Length = 591
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 574 VVYYDLDTLQRSKRAVIYGDYNRYVETD 657
VV +D+D +R+ A I GDY E D
Sbjct: 312 VVVFDIDESERNNTAYIIGDYGCLKEVD 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,470
Number of Sequences: 28952
Number of extensions: 296249
Number of successful extensions: 1024
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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